Hippoglossus stenolepis (Pacific halibut): 118100914
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Entry
118100914 CDS
T08308
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118100914 (scn4aa)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118100914 (scn4aa)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
Motif
Other DBs
NCBI-GeneID:
118100914
NCBI-ProteinID:
XP_035002339
LinkDB
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Position
21:complement(18128357..18149659)
Genome browser
AA seq
1902 aa
AA seq
DB search
MAPVLPPRGADAFRPFSQESLAEIERVKEERKKAAEVEGHEDETTEAPNADLEAGKSLPM
IYGDPPSEMLNTPLEDLDPFYKGQNTFVVITRGNTIFRFNAEPACYILSPFSLLRRGSIK
ILIHSLFSMFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTVEATVKVLSRGFCVGSF
TFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQS
VKKMVDVMILTVFALAVFALIGLQLFMGNLRHKCVLWPIETSNETSFEFFNTTATFGDTV
SHDGTMGVNQTTYSNSTFDFMEYIQNSDNHYFVEGSLDALLCGNSSDAGMCPEKFTCMKA
GRNPNYGYTSFDSFGWAFLALFRLMTQDYWENLFQLILRAAGKTYMLFFVVIIFLGSFYL
INLILAVVAMAYDEQNQATQREAIEKEEEFQRLLEQLRNQDQPLNLGSRATLTSKKSLSH
HTSSQLGDDELSLECDDIVKDCNGRVIPNILIRAPTMVKSAADYELEERSLGSVHSMIHL
DGPGLTQRTASAMTVLTAAAMEELEDAQRPCPPGWYKFADKFLKWDCSPSWVVFKNWMYV
VVMDPFVDLTITICIVLNTLFMAMEHSPMTPEFEYMLLVGNLVFTGIFTAEMVFKLVAMD
PYYYFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKII
GNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCKISLDCELPRWHMHDFFHSFLI
VFRILCGEWIETMWDCMEVAGAGMCLVVFMLVMVIGNLVVLNLFLALLLSSFSGDNLSAG
DEDGEMNNLQIAIGRITRGIDWFKAFVVRIVQQNLDKKPRGPEEGPTDGSEPKTEGIEMN
HLDTCQDFKMADGISNCLVEGRPSGLPVDGELSLNVPIAQGESDFENLGEEDDEDDDDDD
DADDAIDLEMLDEESNQNTENSEDECNMPRKLMGALCDGDSSICSTVDYQPPEPEPEEVE
EEEPEPVEPEACFTDECVSRWPCLTVDITQGRGKKWWNLRRACFTIVEHDWFETFIIFMI
LLSSGALAFEDIYIERRRTIKIILEYADKIFTYVFVIEMLLKWVAYGFKTYFTNAWCWLD
FFIVDISLISLVANWMGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIF
NVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTEELFPLTEVNNRSDCMAMEEATQEARW
VNVKVNYDNVGQGYLSLLQVATFKGWMDIMYAAVDSREVEEQPSYEINLYMYIYFVIFII
FGAFFTLNLFIGVIIDNFNQQKKKFGDKDIFMTEEQKKYYEAMKKLGSKKPQKPIPRPTN
LIQGVVFDFISQQFFDIFIMVLICLNMVSMMVETDNQSPEKEDFLFKLNVSFIVVFTGEC
LLKLFALRQYFFTNGWNVFDFVVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIGRILR
LIKGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKGAGIDDIFNFE
TFGGSIICLFEITTSAGWDGLLLPMLNSNFPDCDPNFENPGTDVKGNCGNPGMAMIFFCS
YIIVSFLVVVNMYIAIILENFNVAQEESGDALCEDDFEMFNETWEKFDLDGTQFIEYSRL
SDFCDTLQEPLRVAKPNLLRLIEMDMPLVIGDRIHCLDVLLAVTKIVLGDTVEMAAMKES
IEAKFILNNPTSDSFAPITTTMRHKEEQMAAVVIQRAYRTHLLKRCIRHAAFMHRSKRSG
KKDGSGDPPEREGLLARKLGVLYGSNAELAEEMEQAALETLANQEPLTPETVPQHTGAQC
GPEPPEPHVMVVPVEITNEVLLHSAPDRQLFPVDANLRESIV
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgtgctccctccccgaggcgccgatgcgttccgccccttcagccaggaatca
ctggcggagatcgagagggtcaaggaggaaagaaaaaaggctgcagaagtagagggccat
gaggacgaaacgacagaagccccgaacgccgacctggaggcggggaagagcctgcccatg
atctacggagaccctccatctgagatgctcaacacacctctggaggacctggaccccttc
tacaaaggacagaacacattcgttgtgatcaccagaggaaacacaatcttcaggttcaac
gctgagccggcttgctacattctgagcccctttagtttgcttaggagaggaagcatcaaa
attcttatacattcattatttagcatgttcatcatgattacgattctgtcgaattgtgta
ttcatgacgatgagcaacccaccagcatggagtaaaaccgtggagtatgttttcactggt
atttacaccgtcgaggcaacagtcaaagtgttgtccagaggtttctgtgtggggtctttt
acattccttcgagatccgtggaattggctggatttcatggtgatcagcatggcatacgtc
actgagttcgttgaccttggcaacgtgtcagccctcaggacgtttcgtgttcttcgagcc
cttaaaacaattactgtgattcctggtttgaaaaccatcgtggccgctctgatccagtcg
gtgaagaaaatggtggacgtcatgattctgacggtgtttgctctggcggttttcgccctc
atcggcctccagctcttcatgggaaatctgcgacacaaatgtgtgctgtggccgatcgaa
acttcaaatgaaacttcattcgaatttttcaacaccacggcaacgttcggcgacacggtg
tcccacgacggcaccatgggcgtgaatcagacgacgtattccaacagcacctttgatttc
atggaatatattcaaaactccgataatcactattttgtggaaggaagcctcgatgctcta
ctctgtgggaacagctctgatgctggaatgtgccccgaaaaattcacctgcatgaaggcc
gggaggaaccccaactatggctacaccagctttgactcgtttggctgggccttcctcgcc
ctcttcagactcatgacccaggactactgggagaaccttttccagctgatcctgcgggca
gctggtaagacatacatgctgttctttgtggtgattatcttcctggggtccttctatctc
atcaacctcatcctggccgtggtagccatggcttacgacgagcagaatcaggcaacccag
cgagaggccatagagaaagaggaggagttccagcggctactagagcaactcaggaatcaa
gaccagcctctgaatcttgggagccgagccactttaaccagtaagaagtcgctgagtcat
cacacgtcgtctcagttgggggacgatgaactgagtcttgaatgtgacgacattgtcaag
gattgcaacgggagagtcattcccaacatactcatcagagcgcccaccatggttaagtct
gctgcagattatgaactcgaggaaaggtcactgggctctgtgcacagcatgatccatctg
gacggaccaggcctgacgcagaggacagcgagtgctatgaccgtgctcactgcagctgct
atggaagagttggaggatgcccagaggccgtgcccacccggctggtacaagtttgccgac
aagttcctgaagtgggactgctccccgtcctgggtggtctttaaaaactggatgtacgtc
gtggtgatggaccctttcgtcgacttgaccatcaccatctgcatcgtgctcaacaccctc
ttcatggccatggagcactcccccatgactccggagtttgagtacatgctcttagtgggg
aatctggttttcacagggatctttacagcggaaatggtcttcaagcttgttgcaatggat
ccttactattactttcaagttggctggaacatcttcgacagcatcattgtcacgctcagt
ctcgtggagttggggctggcgaatgtccaggggctctctgtcctccggtctttccgtctg
ctgcgtgtcttcaaactggccaaatcctggccaacgctcaacatgctgatcaagatcatc
ggaaactcagtgggcgctttagggaacctgactttggtgctggccatcattgtcttcatc
ttcgccgtggtgggcatgcagctgtttgggaagaactacaaggactgcgtgtgcaagatc
tccttagattgcgagctgccacgctggcacatgcacgacttcttccactcgtttctcatc
gtgttccgcatcctgtgcggggagtggatcgagaccatgtgggactgcatggaggtggca
ggagctgggatgtgtttggtcgtcttcatgctggtcatggtcatcggaaatcttgtggtg
ttgaacctcttcctggccttgctcctcagctcgttcagcggggacaacctctcagcggga
gacgaggacggggagatgaacaacctccagattgccatcggcaggatcacgcgaggcatc
gactggttcaaggcgttcgtcgtgcgaatcgttcagcagaatctcgacaaaaaacccagg
gggcccgaggagggtccgacggatggctcggagccaaaaacagaaggaatcgaaatgaac
cacttagacacctgtcaggatttcaaaatggcagacgggatatctaattgtctggttgaa
ggccggccttctggacttcctgtggacggagagctcagtctcaatgtgccaatcgcccag
ggagagtcggactttgaaaacctgggcgaggaggatgatgaagacgatgatgacgacgac
gatgctgatgacgctattgacttagagatgttagatgaagagagcaaccagaacacagaa
aactcagaagatgaatgtaacatgccaagaaaactgatgggtgctttgtgtgacggggat
tcttcgatatgcagcacagtggactaccaaccaccggagcctgaaccagaagaggtggaa
gaggaagagccggaaccagtggaaccagaggcctgcttcactgacgaatgtgtgagtcgc
tggccatgtctgactgtggacatcacccaaggtagaggcaagaagtggtggaacctccgc
agggcttgcttcactatcgtggagcacgactggtttgaaaccttcatcatcttcatgatc
ctgctcagcagcggggctctggcctttgaagacatatacatagaaagacgccgaaccatc
aaaattattctggagtatgctgacaaaattttcacctacgtctttgtcatcgagatgctc
cttaaatgggtggcatacggcttcaagacctacttcaccaacgcctggtgctggttagac
tttttcattgtagatatttccctgattagtttagttgccaactggatgggctactctgac
cttgggccaatcaaatccctcagaaccctcagggcgctgaggcccctccgagcattgtcc
agatttgaagggatgagggtggtggtgaacgctctcgttggggcgattccctccatcttc
aacgtgcttctggtgtgtttgatcttctggctcatcttcagcatcatgggagtaaacctg
ttcgccggcaagttctaccgctgcatcaacaccaccacagaggagcttttcccgctcacc
gaggtcaacaaccggagcgactgcatggccatggaggaagccacgcaggaggcgcgctgg
gtcaacgtcaaagtcaactacgacaacgtggggcaaggctacctgtcgctgcttcaagtg
gcaacgttcaaaggttggatggacatcatgtacgctgctgtggactcaagagaggtggaa
gagcaaccgtcttatgagatcaacctctacatgtacatctactttgtcatcttcatcatc
ttcggcgccttcttcacactcaatctcttcatcggcgtcattattgacaatttcaaccaa
caaaagaaaaagtttggagataaagacatatttatgactgaggaacagaagaaatactac
gaagccatgaagaagctcggttcaaagaagccacagaagccaattccacgtccgacaaac
ctaatccagggcgtggtgtttgacttcatcagtcagcagttctttgacatcttcatcatg
gtgctcatctgcctcaacatggtgagcatgatggtggagacggacaaccagagcccggag
aaggaggatttcctctttaaattgaacgtgtcgttcatcgtcgtcttcaccggggagtgt
ctgttgaagctcttcgccctgcggcagtacttcttcaccaacgggtggaacgtgtttgat
tttgttgtggtcatcttgtcaatagctggcacgatgctctctgacatcattgagaagtac
tttgtgtcgcccactctgttcagagtgatccgactggccagaataggcaggattctgcgt
cttattaaaggagccaagggcatccggacgcttctctttgctctgatgatgtcacttcct
gccctcttcaatattggtctcctactcttcctcatcatgttcatcttctccatatttggc
atgtcaaactttgcctatgtcaagaagggggctgggatcgatgacatttttaactttgag
acgtttggcggtagcatcatctgcctgtttgagatcacgacgtcggcgggctgggacggg
cttttgctcccgatgctgaacagcaactttccagactgtgatccaaactttgagaacccg
ggaaccgacgtaaagggtaactgtggcaacccgggcatggccatgattttcttctgcagc
tacatcatcgtctccttcttggtggtggtcaacatgtacatcgccatcatcttggagaac
ttcaacgtggcgcaggaggagagcggtgacgcgctctgcgaggacgacttcgaaatgttc
aacgagacgtgggagaagttcgacttagacgggactcagttcattgagtacagcaggctc
tccgatttttgtgacaccttgcaggagccgctgagggtggccaagcccaacctgcttcgc
ctgattgagatggacatgccgctggtcatcggggacaggatccactgcctggatgtcttg
ctggccgtcacaaagattgtcctgggagacacggtggagatggcggcaatgaaggagagc
atagaggcgaaattcatcctgaacaaccccacatcagactcctttgcaccgattaccaca
acgatgcgccacaaagaagagcagatggcggctgtggtcattcagagggcttaccgcacc
cacctgctaaaacgctgcatacgccacgccgctttcatgcaccgctctaagaggtcgggt
aaaaaggatggaagtggtgatccgccagaaagggaggggctgcttgcacggaagctggga
gtgctctatgggagcaacgcagagctggcggaggagatggagcaggccgctctggaaact
ctggcaaaccaagagcctctcactcctgagacagtgccacagcacacaggggcccagtgt
ggccccgaaccccctgagccacatgtcatggtcgtacctgtcgaaattactaatgaggtt
ttattacattcggcccccgaccgacagctcttccctgtagacgcaaacctgagagagtcc
atcgtataa
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