Hippoglossus stenolepis (Pacific halibut): 118100961
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Entry
118100961 CDS
T08308
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
118100961
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hsp03037
]
118100961
04515 Cell adhesion molecules [BR:
hsp04515
]
118100961
Cilium and associated proteins [BR:
hsp03037
]
Primary cilia and associated proteins
USH complex and associated proteins
118100961
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118100961
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
PCDH15_12th
ECD
Cadherin_FAT4_N
Ig_Cad99C_N
Cadherin_CELSR2_9th
Ig_CLSTN
Cadherin_2
CDH23_a-b
Fibulin_C
Ig_BT4661_1st
RibLong
Big_9
TagA
Motif
Other DBs
NCBI-GeneID:
118100961
NCBI-ProteinID:
XP_035002407
LinkDB
All DBs
Position
21:complement(14928455..15061877)
Genome browser
AA seq
2012 aa
AA seq
DB search
MVRTRLMGPLSWGWVKWPSVMGTGVLYLLLLSTCLGQDTEDWQYEECKLSRSGPPATIVA
IDEESPNGTLLVENMQINGVAEGPDRTISLSLRDNRDYWVILDPSKQALYLNSTGRLLDR
DPPSYIQSIVVQVQCTNELIGTVILHEVRIVVRDRNDNAPRFQQPRYYVAVSELTPVGTT
IFSGFWGNNGAADIDDGPNGQIEYTIQYNPKDPTANRTFDIPLTLFGSMVLRERLNYEEI
TRYLVIIQANDRAPYPSERRTATTTLTVDVLDGDDLGPMFLPCTLVGNTRDCSPITYKAN
VLELTEPNKVNPLNVTPPIQAVDQDRNIQPPSERPGILYSILIGKPQTYAEYFSLNRTTA
ELLLLRPIDRELYRRFDLVIKAEQNNGHPLPAFANLQIEVLDENNQAPYFLETSYHGYVS
EASPVGTTIATSGSLSAPLAIVALDNDVEETKDPQLQFSLDSYSHVFSVSATGIRRYITL
LQPLDRETQDFYTFTLLASDGVQQSFPVTVTITVLDANDNTPTFANVSYNVNLFTDMMPG
ETVLQLSAVDSDAGPNGQVTYRILAGAQEHFIIENSTGIISVAPGVDLAVGRSYALTVEA
MDNGPAPQRRSSITTVYIEVLPPNNQSPPRFPLQQYNLEISEAMRTGATLLNLQAVDRER
DTITYKIHSGDPHGHFALKENSGTLVLDKPLDRESLDYYTLVVTASDGQPDGTSTAMVNI
MVMDVNDNDPLFISSLTVNLTVTEEQDNAFVGQVKATDPDLGSSGQVHYRLVNHQKLFSI
NATGAIRTTVPLDREVKGHYFLIVEAWDGSVDPRRSRLTLSVTVLDVDDNIPVFTQQTYN
VNLPENSPKDSVILQLKAIDADLDSNLTYRIRSEGLDPEITRLFRVDPGTGELSVLKVLD
YEALKDSEPTYMFTVEALDREGTMPPGLASVTVTIIDMNDFPPVFSQSAYRGMVAPNAVK
GTIVTTVTANDSDPAGTPAGLVRYKVDQDAYPYSASIFDVDEHTGHVVTRVNLNEEPNLK
FNLVVVAYDDGEPLKENTTLVEITVLQPSVIPVFTQEEYRFAPVSEEADVGTPVGVIVAA
AVNQTIVYSIIEGNEGGVFALNETTGVISTAKPLDYEANSSYVLRVEANSMRVVSSNLRV
PSKTNTAKVMIDIQDENDHPPVFTTSLYIGGVAEDAKTFTSVLQVQALDQDTGNYSSMIY
RLIIPPQPGKDTKKSKDGFVIEPYSGVVKTAIMYRNMRRSYFKFEVVATDNYGQGHSTKA
EIVVSVVNQLDMQVVVSNVPPTYVEKNKNKLLSILERYVQDQIPGAKVVVETIGPNRHGD
GMEQEDYTKSDLMIYAIDPLTNRAVSRQELYKFLDGKLLDINKEFQPFLPPGGRILEIRT
PDVVTSVKKAMQTVGYTEGALLALAVIIIICCVPAILIVIITYRQFKERQAECAKTARIQ
MALPTGKPGGGTANNLYEELGDNAIQTRSNHSGGGNGGSLDEIDRQRLISDFADRAIAAH
RQCVANGGVLNKLPKSESNITFLSDENPLTIKNPIYHEDGTLSSPETLGRSQRRRDLLGN
FSPSRKGLREAWLRLSSSGGDVGFGGYSGSDSGWGSGGGHSWTLPSRLHRRDMYDAVRRQ
VVMDPVQWELELLKAEFKESKDAGLDSGFDRGLDSDLMGSPSLEPKLTVKEQARQFEQQA
LQEMRQRQNRDSRGSLSPDFLLSIFPESPQHLKQTPTHTIPFVLTRDGPPSIIVTQSDGG
TPPPSHKPTPPVLRRFGGNLTANPSGDDRLQVHLEIIPDPPSTPPPPPPPMTPPPPPPPA
SSPPSPTSPPPQHPASPPPLPPPSPHSNQTKKQAPPPPPPPPPPPPPPLPPPSSPSLLRP
STFVLPSLSEVPALRPVSLRPPPPPLPVEPEPQRRELKGILKNIQNIADIEKSVANMFSQ
IDRKQIPLKKVMKGRASIDSLDSLDLDLLAAEGGGGGEAGSGGGEGGEGGREGTGGGEDP
PPPPPPQIRPNTNMNSIVEELEKRFPSQSTML
NT seq
6039 nt
NT seq
+upstream
nt +downstream
nt
atggtaagaacgcgcctaatggggccactgtcgtggggctgggtcaaatggccgagtgta
atgggaacaggagtcctttatctgctgctgctatcaacctgccttggccaagacacagaa
gattggcaatatgaggaatgtaaactgtctcggtcgggtcctcctgccaccatcgttgcc
atagatgaagagagccccaacggaaccttgttggtggagaacatgcagattaatggcgtg
gccgagggtccggatcgtaccatctctctttccctaagggacaaccgcgactactgggtg
attctcgacccttccaaacaagccctttatctcaacagcactggacgccttctggataga
gatcccccctcgtatattcagtccatcgtggttcaggttcaatgtaccaacgagctgatc
ggcacggtgattttacacgaggtccgcatcgtggtccgagaccgcaacgacaatgccccg
cgattccagcagccgagatactatgtggccgtcagcgagttgacaccagtcggaaccacc
atcttctctggtttctgggggaacaacggggcggccgacatcgacgacgggcccaacgga
cagatagagtacacgatccagtacaacccgaaagacccgacagccaacagaaccttcgac
atcccgctgacactgtttggctccatggtcctaagagaaagactcaactacgaggagata
acacgctacctggtcatcatacaggctaacgatcgagccccctacccgagcgagcgccgc
acggccaccaccactctgaccgtggacgtgctggacggtgacgacttgggtcccatgttt
ctgccgtgcacactcgtgggaaacacccgtgactgcagtcccatcacgtacaaggccaac
gtactggagctgacagagccgaataaggtgaatcctctcaatgtgactccaccgattcaa
gctgtggaccaagacagaaacatccagcctccgtctgaaagaccagggatcttatactcc
atcctcatcggcaaacctcagacctatgcagaatatttcagcctgaacagaaccacagcg
gagctcctgctgctgaggcccatcgacagagagctgtaccgcagatttgatctggtgatt
aaggcagaacagaacaatggccaccccctgccagcatttgccaacctccaaatcgaagtg
ctggatgaaaacaaccaggcgccctacttcctggaaacaagttaccatggctacgtcagc
gaagcatcacctgtgggaaccaccatagcgaccagcggcagcctgtccgcaccactggcc
atcgtcgctctggataatgatgtggaggagacgaaggaccctcagctccagttctcgttg
gacagctactctcacgttttctccgtgtccgcgactggaatcagaagatacatcacgctg
ctgcagccgctggacagagagacacaagacttctatacattcacgctattagcgtcagac
ggtgtccagcagagctttccggttaccgtgacgataacagtgctggatgcaaatgacaac
actccgactttcgctaacgtctcttataatgtcaacctgtttactgatatgatgcctgga
gaaacggtgctacagctgtcggcagtagattctgatgcaggtcccaatggtcaagtcacc
taccggatcttagctggagcccaggaacactttattattgaaaacagcactgggatcatt
agtgtggcgccgggtgttgacctcgctgtggggcggagctacgcgttgactgtggaagcc
atggacaatgggcctgcacctcagcgacggtcgtccattaccaccgtctatatcgaagtt
ttgcccccaaacaaccagagccccccacgtttccccctgcagcaatacaacctggagatc
agcgaggccatgaggacgggagcgacgctgcttaatctgcaggcagtggatcgggaaaga
gatactatcacttacaaaatccatagtggagacccccatggacactttgcactaaaggag
aattcagggactttggttctggacaagcctctggacagggagtctctggattattacacc
ctggtggtcacagcctcagacggacagccagatgggacgtccacagcgatggtgaacatt
atggtcatggatgttaatgacaacgacccgctgttcatttcctcactgacagtgaacctc
actgtcacagaagagcaggataatgcctttgtgggacaagttaaggctacagaccccgat
ctgggctctagtggtcaggtccactatcggctcgtcaaccaccagaagctcttttccatc
aacgccaccggagcgatcagaaccacggtgccgctggacagggaggtgaaaggtcactac
tttctgatcgttgaagcctgggacggttcggtggacccccggcgatccaggttaactctg
tccgtcaccgttctggacgtggacgataacatcccggtgttcacccaacaaacctacaat
gtcaacctaccggagaacagccccaaagactcagtcatattacagttaaaggcgatagat
gccgacctcgactccaacctcacgtatcgcatcagaagcgaaggcctggacccggagatc
actcggcttttccgcgtcgacccagggaccggggagctctcagttctgaaggtcctggac
tacgaggcgctgaaggactccgagcccacgtacatgttcaccgtggaggccctggataga
gaggggaccatgcctcctggactcgcctccgttaccgtcacgatcatagacatgaatgac
tttcctccggtattcagccagtcagcgtaccgaggcatggtcgccccgaacgctgtcaag
ggaaccatcgtgaccacagtgacggccaacgactctgaccctgcgggcaccccggcaggt
ctagtgcgatataaagtggaccaggacgcgtatccatactctgccagtatatttgatgtg
gacgaacacacaggacatgtggttaccagagtgaacctcaatgaggagcccaacctgaag
ttcaatctggtggtggtggcctacgacgatggcgagcctttgaaggagaacacaactctg
gtggagatcacagtcctccagccctccgtcattcctgtgttcacccaggaagaatacagg
tttgcaccagtgagcgaggaggctgatgttgggactccggtgggagtcattgtggcagct
gctgtcaatcaaactatcgtgtactccatcattgaaggcaacgagggaggggtgttcgca
ttaaacgaaacaacgggagtgatttccactgccaagcctctggactacgaggccaattcc
agctacgttctgagggtagaggccaactccatgagggtggtgtcctccaacctccgagtc
ccatcgaagaccaacacagcgaaggtgatgattgacatccaggatgagaacgaccaccca
ccagttttcaccacatctctttacatcggaggcgttgcagaagatgccaaaaccttcacc
tcagtcttacaagtccaggctctggaccaagacactggtaactacagttcaatgatttac
cggctgatcatcccacctcagcctggtaaagacaccaaaaaaagtaaagacggatttgtc
atcgagccgtacagcggcgtggtgaagacggcaatcatgtaccgcaacatgaggaggtcg
tattttaagtttgaggtggtcgctacggacaactatggacaaggacacagcaccaaggca
gagatagtggtgtcagtcgtgaaccagctggacatgcaggtggtcgtatcaaacgtccct
cccacctacgtggagaaaaacaagaacaagctgctcagcattttggaacgctacgtccag
gatcagataccaggagcaaaggttgtcgtggaaaccatcgggcccaatcgccatggtgat
gggatggagcaggaggactacaccaagtcagacctcatgatttatgccatcgaccctctg
acaaatcgagccgtatccagacaggagctctacaagtttctcgacggtaaactcttggac
atcaacaaagagttccagcccttcctcccccccggcggacggattctggagatccgaacc
ccggacgtggtgaccagcgtcaagaaagctatgcaaaccgtaggctacacagagggggcg
ctgttggctctggcagtgattatcatcatctgttgtgtccctgcgatattgatcgtgatc
atcacctacagacaattcaaagaacgccaggcggagtgtgccaagacagcccgaatccag
atggcgctgccaacaggcaaacctgggggaggcactgccaacaacctgtatgaggagctg
ggtgacaacgccatacaaacccgatcaaaccacagcggtggtggcaatggcggcagtttg
gatgaaatcgatcgccagcgcctgatctctgattttgccgatcgcgcgatcgccgcccat
cggcagtgtgtcgcaaacggaggggtgcttaacaaactgcccaagtctgagtccaatatc
accttcctctctgacgaaaaccccctgactatcaaaaaccccatctaccacgaggacggg
accctgagtagtccagagactctcggaagaagccagagaagacgagacctcctcgggaac
ttctccccttccaggaaaggccttcgagaggcctggctgaggctcagctccagtggaggt
gatgtgggctttggtggttacagtggcagtgacagtggatggggatccgggggcggacac
agctggactctcccatcgaggttacaccgaagggatatgtatgacgccgtgagacgccaa
gtggtcatggatcctgtgcagtgggagctggagctcctcaaggctgaattcaaggagagt
aaagacgctggcctggattcaggatttgaccgtgggttggattcagacctgatggggagt
ccgagtctggagcccaagctgacggtcaaagaacaagcccggcagtttgagcaacaggcg
ctccaggaaatgagacaaaggcaaaacagggattcacgaggatccttgtcacctgatttt
ctgctttctattttcccggagtctcctcagcatctcaagcaaactcccacacatacgatc
ccatttgttctgaccagagacggcccccccagtatcatcgtgacccaaagtgacggagga
acccctccaccaagtcacaagccgactccacctgtgctgcggcgcttcggcggaaattta
acagcaaatccgagtggagacgacagacttcaggtccatttagagattatccccgaccct
ccttcgactcctccaccaccaccacctcctatgaccccaccacctccaccacctccagca
tcctctcctccttctcctacatctcctcctccgcagcaccctgcctcccctcctcctctg
cctcctccttcccctcactccaaccaaacaaaaaagcaagctcctcctcctcccccacca
ccgccaccacctcctcctccacctctccctcctccctcgtcgccctcactcctgcgtccc
tccaccttcgtcctcccttcactgtcggaggttccagctctgcggcccgtgtccctccgg
ccgccaccgccgccgcttcctgtggagcccgagcctcaaaggagggagctgaaaggaatc
ctaaagaacatccagaacattgcggacattgagaagtccgtggccaacatgttcagtcag
atagatcggaaacagatcccgctcaaaaaggtcatgaaggggcgggcctccatagattct
cttgattctctcgacttggatttattagcagctgaaggcggaggaggaggggaggctggt
tcaggaggaggggagggaggagagggaggtagagaaggaaccggaggaggagaggatcct
ccacctcctccacctccacagattcggcccaacacaaacatgaactccatcgtggaagaa
cttgagaagcggttcccctctcagtcgacaatgctctag
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