Hippoglossus stenolepis (Pacific halibut): 118101511
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Entry
118101511 CDS
T08308
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5
KO
K09446
interferon regulatory factor 5
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
118101511 (irf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118101511 (irf5)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
118101511 (irf5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
118101511
NCBI-ProteinID:
XP_035003275
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Position
22:complement(18591361..18595223)
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AA seq
471 aa
AA seq
DB search
MSVQPRRIRLKPWLLAQVNGGRFPGLQWINSEQRLFQIPWKHATRHTPTSDEENTVFKAW
ALETGKYQEGVDEPDPAKWKANLRCALNKSREFQLKYDGTKETPVRPYKIYEVCEQPAST
GDVTGGFDDDDDEEMPNLMDLTINPRISDPSPFNQFSLSSNEMFGPHHVIPVPVLPLNSD
LQAPGQNFVSGLSTRLQDLNSLPPPAASVTPGPDLMEASSIGGIQNQQHCKYDLLSSVPL
TDLDLKFQYRGRIMGSLTVSNPQGCRLYSGHLEPSPEQVELFGPVTLQQVLFPGTSEIQN
QKQRFYTEALLDVMDRGLILEIWEQDIYAIRLCQCKVFWSGPGTTEQSPPNPLEREKKIK
VFSLNEFLQGLILFQKGEATNPPPFEIYFCFGEDWPDKKPKEKKLIIVQVVPVVARILTE
MFSGELSWSTDSIRLQISNPDVKDQTVEQFKELQKLLQSQHIQGPWTPNVP
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtccagcctcggaggatccgtctgaagccgtggcttctggcgcaggtgaacggt
ggcaggtttcctggtctccagtggatcaactcggaacaacgcctcttccagatcccctgg
aaacacgctacacgccacacgccaacgtctgatgaagaaaacactgtcttcaaggcatgg
gctcttgagacaggtaaatatcaggaaggtgtagatgaaccggaccccgccaagtggaag
gcgaaccttcgctgcgctctgaacaagagtcgagagtttcagctgaaatacgacggaacc
aaagagacgccggttcgtccgtacaagatctacgaggtctgcgagcagccagcgagcacg
ggtgatgtcacaggtggctttgatgatgatgatgatgaagagatgccaaacctaatggac
ctcaccatcaatcccaggatcagtgacccctcccccttcaatcagttcagtttatcttcc
aatgagatgtttggacctcatcatgtgatcccggtgcccgtcctacctttgaactctgac
ctccaggccccgggtcagaactttgtctctggactctcgaccagactccaggacttgaac
tctttgccgccccctgctgcctctgtaacccctgggccggacctgatggaggccagcagc
ataggagggatccagaaccagcaacactgcaagtacgacctgctaagcagtgtcccacta
acagatctggacctgaagttccagtaccggggtcggatcatgggctctctgacagtgagc
aaccctcagggctgccggctatactctggccatctagagccaagcccggaacaggttgag
ctgtttggacccgtcaccctgcagcaggtcctgttcccagggacatccgagatccagaac
cagaagcagcggttctacaccgaggccctgctagatgtgatggacagaggtctgatcctg
gagatctgggaacaggacatttacgccattcgcctctgtcagtgtaaggtgttctggtct
ggaccgggcacaaccgaacagagtccacccaaccccctggagcgcgagaaaaagatcaaa
gttttcagtctgaatgaattccttcaaggtctgatcctgttccagaaaggtgaagctaca
aaccctccaccctttgagatctacttctgctttggggaggactggccggacaagaaaccc
aaagagaaaaaactcatcatcgttcaggtggttcctgttgtggctcgcatcctgacggag
atgttctcaggagaactcagctggtcgaccgacagcatccgactacagatctcaaaccct
gacgtcaaggaccagacggtggagcagtttaaagaactgcagaagctcctgcagagccaa
cacatccagggcccctggacccccaacgtgccctga
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