Hippoglossus stenolepis (Pacific halibut): 118102876
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Entry
118102876 CDS
T08308
Symbol
trpc5a
Name
(RefSeq) short transient receptor potential channel 5a
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118102876 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118102876 (trpc5a)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118102876 (trpc5a)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
118102876 (trpc5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
118102876
NCBI-ProteinID:
XP_047194959
LinkDB
All DBs
Position
23:complement(3195413..3262501)
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AA seq
1108 aa
AA seq
DB search
MNPMTQLYYKKATYSPYRDRIPLQIVRAEVELSTEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSALLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDNDQSEELDPRQCHDLAKLKLAIKY
HQKEFVAQPNCQQLLATLWYDGFPGWRRRHWVVKLVTCFIIGLLFPVFSLIYLLAPKSAL
GNFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTIVEWMILPWVLGFIW
AEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASEEPSNCKGIRCERQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIIPSPKSIWYLLGWLHVKLCGRGQPPGEESHKCENLREFTILTFSRSHVDRSKE
RHADSLIQNQHYQEVIRSLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLL
GNRRPPRRHYSSSSETMRDDGAMASEDDSESGDGGGGGGFGGQRSKGVTFMTPLEDEVRP
AATLCVSALVRSISGMTRVEGGAEREDGELEEGIGWGEEEEEEEGIPKSNGLKTTVIPPS
STTVLPLPSSSFSSSLSTSLSRTRSRLQRISAPSAKTDSFRRLSYLFSRSKRKAPPLPLP
LQSPPSYTISDGLLRPLGSHSHSDFGLSDVTRSETHLHEVGRSVDISNPSFSPRRTNGRD
SLLALPLPPPCPCQSLHCASNMSESSSRLLDSSEDVFQGVSMGGAGEGGVDDRGRRGGLM
MMGGWVGPCDDVIEDSCEVIEDSVTTQL
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatgacacagttgtactacaagaaggcgacgtattcgccgtaccgcgaccgc
atccccctgcagatcgtgcgggctgaggtggagctgtctacagaggagagggcgtacctc
accgctgtggagaaaggcgactatgcgggggtcaaacacgccctccgggaggcggaggtc
tactacaacatggacgtgaactgtctggacccgctgggccgcagcgcgctcctcatcgcc
atcgagaacgagaacctggagatcatggagctgctgctcgaccacggcatccacacgggc
gacgcgctgctctacgccatcaggaaggaggtggtgggcgccgtggagttgctgctgtcg
cacaggaggcccagcggcgagaaacaggttccctcgctgatgatggacagccagttttca
gagttcacccccgacataactcccatcatgctcgctgctcacaccaacaactacgagatc
atcaagctgctcgttcagcggaaggtcactattcccagacctcaccagatacgatgtgac
tgtgtcgagtgcgtctccagttcagaggttgacagtcttcggcattcacggtctcgactc
aacatctacaaggctctggcctccccctccctcatcgcgttgtccagtgaagatcccatc
ctcactgccttcagactgggctgggaactcaaagagctcagcaaggtggagaatgagttt
cgtcaggagtacgaggagctctcccagcagtgcaaacgattcgccaaagacctcctggac
caggccaggagctcgagagaacttgagaccatcctgaaccacagggacaacgaccagagc
gaggagctagaccccagacagtgccacgacctggccaaactcaaactggccatcaaatat
caccaaaaagagttcgtggctcagccgaactgtcagcagcttctggccacgctgtggtac
gacggcttcccgggctggaggagacgacactgggtggtcaaactggtcacgtgcttcatc
atcggactcctgtttcccgtcttctcactgatctacctgttggcgccgaagagcgccctg
ggaaacttcatcaagaagcccttcatcaaattcatctgccacacggcgtcctacctgacc
ttcctcttcctcctgctgctcgcctcgcagcacatcgcccgcaccaacctccacatgcag
ggacccccacccaccatcgtggagtggatgattctcccctgggtgctggggttcatctgg
gcagagatcaaggagatgtgggacggtggattcacagagtacatccacgactggtggaac
ctgatggactttgccatgaactccctgtacctggccacgatatccctgaagatagtggcc
tacgtcaagtataactcctcccgtcccagggaggagtgggaaatgtggcacccgacgctc
atcgccgaggctctgttcgccatcgccaacatcttcagctcgctcagactcatctccctc
ttcaccgcaaactcccacctggggccgctgcagatctcactggggaggatgctgctggac
atcctcaagtttctcttcatttactgtctggtcctgctggcgttcgctaacggtctgaac
cagctgtacttctactacgagaccaaggcgtcagaagaacccagcaactgtaagggcatc
cgctgtgagaggcagaacaacgccttctcaacgttgttcgagacgctgcagtcgctcttc
tggtcgatattcggcctcttgaacttgtatgtcaccaacgtgaaagcccggcacgagttc
accgagttcgtcggggcgaccatgttcgggacgtacaacgtgatctcgctggtggttctg
ctcaacatgctgatcgccatgatgaacaactcctaccagctcatcgccgaccacgctgac
atcgagtggaagtttgctcgcaccaagctgtggatgagctacttcgacgagggcggaacg
ctgccgccgccgttcaacatcatcccgagccccaagtccatctggtacctgctggggtgg
ctccacgtcaagctgtgcggccgaggccagccgccgggggaggagtcgcacaaatgtgaa
aacctccgagagttcacgattctcaccttttcacgttcacatgttgacagatcaaaggaa
cgtcacgctgacagtctgatacagaaccagcattaccaggaagtgatccggagcctggtg
aagaggtacgtggcggccatgatacgcagcgccaagacggacgaggggctgacggaggag
aacttcaaggagttgaaacaggacatctccagtttccgctacgaggtccttgatctcctc
ggcaaccggcgtcctccccggcgacactactcttcctccagcgagacgatgagagacgat
ggcgccatggcgtcggaggatgacagcgaatcgggtgacggcggcggaggtggtggattt
ggaggccagaggtcaaagggcgtgactttcatgaccccgctagaggatgaggtgaggccg
gcagccacgctctgcgtttcggctctggtgcgctccatctccggaatgacccgggtagaa
ggtggggcagagcgtgaggacggggagctggaggagggcatcggatggggggaagaggag
gaggaagaggaggggataccaaagagcaatgggctgaagacgaccgtcatccctccgtcc
tccaccaccgtcctccccttgccttcgtcatcgttctcctcgtcgctctcaacgtcactt
tctcgcacgaggagtcgtctgcagcgcatctcagctcccagcgcaaagacggactccttc
agacgcctctcctacctgttctctcgctccaaacgcaaagcgcctcccttgcctcttccc
ctccaatctccgccctcctataccatctcagacgggctgctccgcccccttgggagccac
agccactccgacttcggactcagtgacgtgaccagaagcgagacccacctgcacgaggtg
ggccgctcagtcgacatcagtaacccctcgttctcgccgcggagaacgaacgggagggac
tcgctcctggccctgcccctcccacccccgtgcccctgccaatccctgcactgtgcttcc
aacatgtccgagtccagctctcgcctcctggactccagcgaggacgttttccagggcgta
agcatgggaggagcgggcgagggcggtgtggatgacagagggcgaagaggagggttgatg
atgatgggcgggtgggtgggaccatgcgacgatgtcatagaggacagctgtgaggtcata
gaggactcggtcaccacgcagctatag
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