Hippoglossus stenolepis (Pacific halibut): 118109924
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Entry
118109924 CDS
T08308
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X1
KO
K04858
voltage-dependent calcium channel alpha-2/delta-1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04260
Cardiac muscle contraction
hsp04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118109924
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
118109924
04261 Adrenergic signaling in cardiomyocytes
118109924
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118109924
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118109924
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA
VWA_3
VWA_2
dCache_1
Cache_3-Cache_2
DUF2201
VWA_CoxE
L544_NTransf
Motif
Other DBs
NCBI-GeneID:
118109924
NCBI-ProteinID:
XP_047195913
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Position
5:complement(17606817..17669178)
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AA seq
1097 aa
AA seq
DB search
MDTCRVPAWVFLVLVWQGGCLASQFPTQLMIKEWVDQMQKELVTLADTATGGMSLTQIFL
RNQHLYSVEQNDAEELVARAARNIEQLLRKRSAALKKLAAAAEQFQVDHTWKDEFEDDEI
SYYNSKDNLDANETEGKKYRLRPDFKEDASFRRLTDHNHTAVHIPTDIYDGSTIVLNELN
WTEALEDVFRKNREDDPTLLWQVFGSATGLARYFPASPWMDARKTPSKIDLYDVRRRPWY
IQGAASPKDMLILVDASGSVSGLTLKLIRTSVSEMLETLSDDDYVNVVYFNTRVKKTACF
DHLVQANVRNKKLLKDAVQNITAKGITNYTKGFEFAFEQLSVKNVSRANCNKIIMLFTDG
GEERAQAILEKYNADKKVRIFTFSVGQHNYDKGPIQWMACSNKGYFYEIPSIGAIRINTQ
EYLDVLGRPMVLADKQAKQIQWTNVYLDALELGLVITGTLPVFNRTMTVDERHGEHQNQL
ILGVMGIDVSLDDIKKLTPRFTIGPNGYYFAIDPNGYVLLHPNLQPKKRIGNRKLRLNDK
YAVTFHEEPVTLDLLDAELENDIKVEIRKMMIDGEIGERTIDTLVKTQDERYIDRGIRTY
TWAPVNGTDYSLALALPKYSEHFIQAKLGEDMKEAMWQGAMETMQLDRFDEFGHTYIAPR
EYCKELKLSLNNTQFLLDFNQFIERTPPEACNVSLVSRLILDAGLTAELVQLWNEQSVDG
IVARFVATDGGITRVYPRSAAEEWSENHETYESSFYKRTLDNEIYIFTAPAFNTEGREPV
SEPCILVSKAVDLTIDKVTLKPAVVGVKLNISFWMNSFMNATLKLNCKDEICGCLKNDKH
VDCVILDDGGFLLMSNQDEYISLIGQFFGEVDPVLMINLVNTSLYSFNKTYDYQSVCDPE
KDSKAAAGPRSVYVPTIADLLSVGWWASTAAWSILQQLIYGLIFPNLLEAVESAEEEISD
AMFKESCITEQTQYFFDNDERSYSGVLDCGNCSRMYRGEKLPNTNLVFLITDAKATCLSC
DPRPLRQAEQPSEGPDPCELAQNPRYRKGPDACFDNNENDEPLCPISRGSALSSAPPVLF
LLLSSGRMILSAEEGPA
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggatacctgcagggtgccagcctgggtgttcctggtcctggtgtggcagggcggctgt
ctggcatcgcagtttccgacacagctcatgattaaagaatgggtggatcagatgcagaag
gagctcgtgaccctggcagacacggccacaggcgggatgagcctcacacagatttttctg
agaaaccagcacctgtactctgtggagcaaaacgacgcagaggagctggtggccagagca
gccaggaacattgagcagctgctgcggaagaggtctgctgccttgaagaaattggccgcg
gctgctgagcaattccaggtggatcatacgtggaaagacgagttcgaggatgatgaaatc
tcctactacaactcaaaggacaatctggatgcaaatgagacggagggaaaaaaataccgg
cttcgaccagactttaaagaggacgcgtcatttaggcgtttgactgatcacaaccacacg
gctgtccacatccccactgacatctatgatggatccaccattgtgctgaatgagctgaac
tggacggaggccctggaggacgtgtttagaaagaacagagaggatgacccaacactcctc
tggcaggtgtttggtagcgctacaggcctggctcgctacttcccagcttctccgtggatg
gatgctcgtaaaacccccagtaaaattgacctgtatgacgtccgcaggaggccatggtac
atccaaggagccgcttcccccaaagatatgctaatcctcgtcgatgcgagcggtagtgtg
tctggcttgactctcaaactgatcaggacctcggtcagcgagatgctggagaccctgtct
gacgacgactacgtcaacgtagtttatttcaacaccagggtgaagaagacggcgtgtttc
gatcacctggttcaggccaacgtgaggaacaagaagctgctgaaggacgccgtgcagaac
atcacagctaaaggaataaccaactacaccaaaggcttcgagtttgcttttgagcagctg
tctgtgaaaaatgtgagcagagcaaactgcaacaagatcatcatgctgtttactgatgga
ggagaggagagagctcaggccatactggagaaatacaatgctgacaaaaaggtgaggatc
ttcaccttctcagtcggacaacacaactatgacaaaggacccattcagtggatggcttgt
tccaacaaaggttacttctatgagattccgtccatcggagccatcagaataaacacgcag
gagtacctggatgtcctggggcgacccatggttctggcagacaagcaggccaaacagatc
cagtggaccaatgtgtaccttgatgccctggaactgggtctggtcatcacgggaacactc
cctgtcttcaatagaaccatgaccgtagatgaaaggcatggcgagcaccagaaccaattg
attctcggtgtgatggggatcgacgtgtctctggatgacatcaagaaactcacgccacgc
ttcactattggtccaaatggatactactttgccattgaccccaatggatacgtcctgctg
caccccaacctccagccgaagaaaaggattggaaacaggaagctcaggctcaatgataag
tatgctgtcacttttcatgaggaacctgtaactcttgaccttctggatgccgagcttgaa
aatgacatcaaagtggagatcaggaaaatgatgatcgacggggagataggcgaacgcacc
attgatactctggttaaaactcaggatgagagatacatagatagaggaatccggacctac
acatgggcaccagtcaatggaacagattacagcctggctctcgccctgcctaaatacagt
gaacacttcattcaagctaaactaggggaagacatgaaagaagctatgtggcaaggagct
atggagacgatgcagctggataggtttgatgaatttggtcacacctacatcgctccgagg
gagtactgcaaagagctgaagttgtcactcaacaacacccagtttctcctcgacttcaac
cagttcatcgaaagaacccctccagaagcatgtaacgtgtccctcgtgagtcgactgatc
ctggacgcaggtctgacggctgaactggttcaactttggaatgagcagagtgtggatggg
attgtcgccaggtttgtagccacagatggaggaatcacgcgggtctacccacgaagtgct
gcggaagagtggagcgagaatcatgagacctacgagtccagtttctacaaaaggaccctg
gacaatgaaatttatattttcacagctccagctttcaacacggagggaagagagcctgtt
tctgagccatgtattctcgtgagcaaagcagtggacctcaccatcgacaaagtcacactc
aaaccagcagtggtcggagtgaaactcaatatctccttctggatgaactctttcatgaat
gctactctgaaactgaattgcaaggatgaaatctgtggctgtctgaagaatgacaagcat
gtggactgtgtgatcctggacgatggaggatttcttctcatgtccaatcaggatgagtac
atctctctgataggtcagttctttggcgaggtggacccggtgctgatgatcaacctggtc
aacacgtccctttactcctttaacaagacctatgactaccagtcggtctgcgacccagag
aaggacagcaaggctgcagcaggaccccgctccgtctatgtgcctaccattgcagacctg
ctcagtgtcgggtggtgggcctccaccgctgcctggtcgatactccagcagctcatctat
gggctgattttccccaaccttctggaagcagtggagtcagcagaggaagaaatatcagac
gccatgtttaaggaaagctgtatcacggagcagactcagtacttttttgacaacgatgaa
cgatcctactcaggtgtcctggactgtggaaactgctccaggatgtatcgtggtgagaag
ttgccaaacaccaacctggtgttcctgatcactgatgccaaggcgacatgtttgtcatgt
gaccccaggccgctacgacaggctgaacaaccttccgaaggtccagatccatgcgagctg
gctcagaacccgagataccgcaaagggccagatgcgtgttttgacaacaatgaaaatgat
gagcccttgtgtccaatcagcagaggttctgccttgagctccgcaccgcccgtcttgttt
ctgctgctcagttcagggaggatgattctgagtgcggaggagggacctgcctaa
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