Hippoglossus stenolepis (Pacific halibut): 118111219
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Entry
118111219 CDS
T08308
Symbol
cacna1fa
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D isoform X1
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04020
Calcium signaling pathway
hsp04260
Cardiac muscle contraction
hsp04261
Adrenergic signaling in cardiomyocytes
hsp04270
Vascular smooth muscle contraction
hsp04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118111219 (cacna1fa)
04020 Calcium signaling pathway
118111219 (cacna1fa)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
118111219 (cacna1fa)
09153 Circulatory system
04260 Cardiac muscle contraction
118111219 (cacna1fa)
04261 Adrenergic signaling in cardiomyocytes
118111219 (cacna1fa)
04270 Vascular smooth muscle contraction
118111219 (cacna1fa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118111219 (cacna1fa)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118111219 (cacna1fa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
118111219
NCBI-ProteinID:
XP_035015533
LinkDB
All DBs
Position
6:complement(5240397..5259559)
Genome browser
AA seq
2096 aa
AA seq
DB search
MEGAKKDAPPGENGGKTDTLGSTGSSRKRGGGAKKAMQANKSALRAPRALCCLTLSNPIR
MAALALVEWKPFDIFILLAIFANCVAMGVTKPYPDDDSNATNHQLEQVEYVFLVIFTIET
FTKILAYGLVMHPSAYIRSGWNLLDFVIVIVGLFSVMAEAMTDHKPGEAHHAAGKPGGLD
VKALRAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIGMLVMFVIIIYAIIGLELFIG
RMHKTCYSIGSGLMVEDDPSPCAFAGSGRFCFGNATECRGKWEGPNGGITNFDNIFFAIL
TVFQCITMEGWTDVLYWMNDAIGFEIPWIYFVSLVIFGSFFIINLVLGVLSGEFSKEREK
AVARGELQKAQESKQLEEDMIGYMDWLIEAEDVDEEGNKRAAIAKKKMMKKFGWYKHNED
GGAESDSDDDIAYLDDDNGFCASLMAKMMANSFCDQLCQLNHTMRKNCRVAVKTTNFYWL
VLLLVFLNTMASASEHYGQPKWLTEMQERANKVLLLLFTLEMLLKMYAFGLQIYFMALFN
RFDCFVVCGGILETLLVELEAIPPIGISVLRCIRLLRIFKMTRHWAALSDLVNSLLNSMK
AICSLLLLLFLFLIIFALLGMQLFGGKFNFDEMQMKRSTFDSFPQALLTCFQILTGEDWN
AVMYDGIMAYGGPIFPNMVVCMYFVILFVCGNYILLNVFLAIAVDNLAGGGGKTKVEEKK
DDEEEWDEDEEKEDEDAGNDEDDWQENEELRAIEGLEGVAPLKADFSPKEKIVPIPDGSS
FFILGKKNCLRVACHNLIHHPYFTNLILIFIIFSSISLAAEDPIKSHSFRNIVRTKHIEA
SLAFFMQTFKPHTGSSSPQVLGYADYVFTSVFTVEIVLKMTVYGAFLHSGSFCRNAFNLL
DLLVVGVSLASFFLHSSAISVVKILRVLRVLRPLRAINRAKGLKNVVQCVFVAIRTIGNI
LIVTTLLQFMFACIGVQLFKGRFYSCTDEAKHTPDECKGTFVVFKDGDMNHPMVRERIWE
NSEFNFDNVLMGMLALFTVSTFEGWPQLLYRAVDANAINRGPIYNYRVEISIFFIIYIII
IAFFMMNIFVGFVIITFREQGEAEFKNCELNKNQRQCVYYALKAQPIKIYIPKNPSQLKF
WRIINSSQFEYIMFALILGNTLTLAVQHYEQSKMFTSVMDILNMIFTVVFTIEMIIKLLA
LRAHHYFIDPWNSFDALIVVGSVLDIAVSELSGGGGHGEGSKGESGKVSITFFRLFRVLR
LVKLLSKGEGIRTLLWTFVKSLQALPYVGLLIAMIFFIYAVIGMQTFGKVAIDDDTHINR
NCNFQTFFMAVLVLFRCATGEQWQEIMLAALPGRRCDPESDTEPGEEFTCGSNLAYIYFI
SFFMLCAYLIINLFIAVIMDNFEYLTRDWTVLGTHHLDEFKRVWSDYDPEAIGRIKHIDV
VTMLRRIQPPLGFGKLCPHRVACKRLVAMNVPLHHDGTVTFSATLFALVRTSLKIKTEGP
IDQQNEELKVIIKKLWKRTKPKLIDEVIPPPRGDEVTCGKFYASFLIQDYFKKFRKRKER
ERKSKRKDRAAFLQQGLRTLQDLAPEMRLAMACDLEEEEGVDGEIFDSEHGTSVSTTPAS
TPMPPIETLVEQMTVVVEPEPRKTNGGVITEQVTALQEHQRPGSELGGVEVVTEQPVRSE
CPPIRVDTLSELPPPPPPPPPPPPPPPPPETSGGAEVVAEEPVVVDTTQVSEQVYNIEGD
AALLASEDRYVYPEPVAPVPPETDYNAQSLKEASSVGEIPYDTQDANGFISNDYSTANMN
GGSVAVSPTPYTPNGYNGNGYSSYNENGSVISINGNGSTLNGGDENGSSLTSYNGNNGYS
GNESRGAQFIRRRLLPNIPKGRTPAFNLQCLRPQSSQDDLPIPGTYRGNTSQSRSRPQTQ
QSIEPRPGSVSSMSTASWVNTTAAGAAPVPGIIPPSGRRGKLIYSPMMLVDEATGSSQPM
WSDGSASLPAGSQPGWHPGQTRTYTSMRMPPVNQGYVNKGSADSLVESILISEGLGVYAR
DPKFVTFAKREIAEACNMSMDDMENAATDLIARGASQSLSRFEEELADEMNCVISY
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atggagggggcaaagaaagatgcccccccgggggagaatggaggcaagacggacaccctc
gggtccactggctcgtccaggaaaagaggtgggggggccaagaaggccatgcaggcgaac
aagtctgccctcagggccccccgagccctctgctgcctcaccctcagcaaccccatccgc
atggcagcgctggcactggtggagtggaagcccttcgatattttcattctactcgccatt
tttgccaactgtgtggccatgggcgtgaccaagccgtacccagatgacgactccaacgcc
accaatcaccaactggaacaagtggagtacgtcttcctcgtcatcttcaccatcgagacc
ttcactaaaatccttgcctacggtttagtcatgcaccccagcgcttacatacgcagcgga
tggaacttgcttgatttcgttatcgtcatcgtcgggttgttcagtgtgatggcggaggcc
atgacggatcataagccaggagaggctcatcacgccgcggggaaacctggaggcctggat
gtcaaagcgctcagagcgttcagggtgctgcgaccgcttcgactcgtatcgggagtacca
agtttacagattgtgttgaactccatcatgaaagccatggtcccccttctccacatcggt
atgctggtcatgttcgtcatcatcatctacgccatcatcggcttggagctcttcatcggc
cggatgcacaagacgtgttactccatcggctcaggcctcatggtggaggacgacccgtca
ccttgtgcgtttgccggcagcggacgcttttgtttcggcaacgcgaccgagtgcaggggc
aagtgggaaggtcccaacggcgggatcacaaacttcgacaatattttctttgccattctg
actgttttccagtgcatcactatggagggctggacagatgtgctctactggatgaacgac
gccattggtttcgagattccatggatctactttgtttctctcgtcatctttggatccttc
ttcatcatcaaccttgtattgggtgtgttgagcggagagttctccaaggaaagagaaaag
gcggtggcgcgtggcgagctgcagaaggcgcaggagagcaaacagttggaggaggacatg
atcggctacatggactggctcatcgaggcggaggacgtggatgaggaaggaaacaaacgt
gctgcgatcgcaaagaaaaagatgatgaagaagtttggctggtacaaacacaatgaggac
ggcggagcggagtccgactctgatgacgacatcgcgtacctcgatgatgacaacggcttc
tgcgcttctctcatggcaaagatgatggccaacagcttctgtgaccagttgtgccagctg
aatcacaccatgaggaagaattgcagagtggctgttaagaccacaaacttctactggctg
gtgctgctgctggtgtttctcaacacgatggccagtgcctcggagcattacggacaaccg
aagtggctcacagagatgcaagagcgagccaacaaggtcctgctgctgctcttcaccctg
gagatgctgctgaagatgtacgccttcggcctgcagatctatttcatggcgctgttcaac
cgcttcgattgcttcgtggtgtgcggcggcatcctggagacgctgctcgtcgagttggag
gctatcccccccatcggcatctccgtgctgcgctgcatccgtctgctcaggatattcaag
atgacacggcactgggctgctctgtccgacctcgtcaattcactgctcaactccatgaag
gctatctgctcccttctcctgctgctcttcctcttcctcatcatcttcgctctgctcggc
atgcagctgtttggaggcaaattcaactttgacgagatgcagatgaagagaagtacattc
gactccttccctcaggctctgctcacttgtttccagattctcacaggagaggactggaat
gctgtgatgtacgacggcatcatggcctacgggggtcccatcttccccaacatggtggtg
tgcatgtactttgtcatcctcttcgtgtgtggtaactacatcctgctgaacgtcttcttg
gctatcgctgtggacaacttggccggaggcggaggaaagacgaaagtggaagagaaaaag
gacgacgaagaagagtgggatgaggatgaagagaaagaagatgaagatgccgggaacgat
gaggacgactggcaggagaacgaggagctgagagccatcgagggactcgagggcgtggct
cctttaaaggcagacttctcgcctaaagagaagatcgtaccaattcctgatgggagctcc
ttcttcattcttggaaagaaaaactgtttgcgagtcgcctgccacaacctcatccatcat
ccctacttcaccaacttgatcctcatcttcatcatcttcagcagtatttccctggctgct
gaggatccaatcaaatcccactcattcagaaacatagtgagaacaaagcacatcgaagcc
tcgctggcatttttcatgcaaactttcaaacctcacactggttcctcttctcctcaggtg
cttggttacgccgattatgtgttcacatcagttttcacggtggagatcgtcctgaagatg
acggtctacggagcttttctgcacagcggctccttctgtagaaatgccttcaatctcctg
gacctactggtcgtcggtgtgtcgctcgcgtccttctttctgcattcaagtgcgatctcg
gtggtgaagattctccgagtgttgcgtgtgctcaggcctcttcgagccatcaacagagcc
aaggggctaaagaatgtggtgcagtgtgtgttcgtggcgatccgcaccatcggtaacatc
ctgattgtcacaaccctgctccagttcatgtttgcatgtatcggagtgcagctcttcaag
ggcagattctacagctgcacagatgaagccaaacacactccagacgagtgcaaaggaacg
tttgttgtctttaaagacggggacatgaaccaccccatggtgagagagaggatctgggag
aacagcgagttcaacttcgacaacgtgctgatgggcatgctggctctattcaccgtgtcg
acattcgaaggctggccgcaactcctctatcgggcggtggatgccaacgcgatcaaccgt
ggacccatctacaactaccgagtggagatctccatcttcttcatcatctacatcatcatc
atcgccttcttcatgatgaacatcttcgtgggtttcgtcatcatcacgtttcgagaacag
ggagaggcggagtttaaaaactgcgaactcaacaaaaatcaacgtcagtgtgtgtactac
gccctcaaagctcaacctataaagatttacatccccaaaaacccctcccagctcaaattc
tggagaataatcaactccagtcaatttgaatacatcatgtttgcgctgattctgggaaac
acgctcactctggctgttcagcattacgagcagtctaaaatgttcacctccgtcatggac
atcctcaacatgatcttcactgtggttttcaccatagagatgatcatcaagctactggct
ctgcgggctcaccattatttcatcgacccctggaactcgttcgatgctttgatcgtcgtg
gggagtgtgttggacatcgcggtctcggagcttagtggaggaggcggccatggcgagggc
agtaaaggagaaagtggaaaagtgtccatcacgttcttccgattgttccgagtcttgcgt
ttggtcaaacttctcagcaaaggagaaggtatccgaactcttctgtggacgtttgtcaag
tcgctccaggctctgccttacgttggtctgctcatcgcgatgatctttttcatctatgct
gtaattggcatgcagacgtttgggaaagtggccatagacgacgacacacacatcaacagg
aactgcaactttcagactttcttcatggccgttctggtgcttttcagatgtgccactgga
gaacagtggcaggagatcatgttggcagctctgcccggcagacgctgtgacccagagtcc
gacaccgagcctggcgaagagttcacctgcggcagcaacttggcctacatctacttcatc
agcttcttcatgctctgtgcttacctgatcatcaacttgttcatcgccgtcatcatggac
aactttgaatacctgacacgagactggaccgtgctcgggactcaccacctggacgagttc
aagagagtttggtccgactacgacccagaggccataggtcgtataaaacacatcgacgtg
gtcactatgctgcgaaggattcagccgccgctcggttttggaaaactatgtcctcatcga
gttgcttgtaaaagactcgtggctatgaacgtcccgctacaccacgatgggacggtcacc
ttcagtgcgactctgtttgccctcgtgcgaacctcactgaagatcaagactgaaggcccc
atcgaccaacagaacgaggagctgaaggtgatcattaagaagctgtggaagcgaaccaag
cccaagctcatcgatgaagtcattcctccccctagaggggacgaggtgacttgtgggaag
ttttacgccagcttcttgattcaggactatttcaaaaagttccgcaagagaaaggagagg
gagaggaaatccaagaggaaggacagggcggcttttcttcagcaagggctgcggacgctg
caggacctggctccagagatgcgtttggcgatggcctgtgacctggaggaagaggagggc
gtagacggagagatatttgacagcgagcatggaacctccgtgagcaccacgcccgccagc
acgccgatgccccccatagagactctggtggagcagatgaccgtggtagtcgaaccagag
cccaggaaaaccaacgggggcgtgatcacagagcaggtgacggccctgcaggagcaccag
aggccggggtccgagctggggggtgttgaagtcgtgacggagcagcctgtgaggtccgag
tgcccgcccatcagggtggataccctcagcgagttgcctcccccacctcctcctcctcct
ccacctcctcctcctcctcctccgcctgagacgtcagggggagcagaggttgtcgctgaa
gaaccggttgtggtagatacgactcaagtatctgagcaggtttataatattgaaggcgat
gctgcacttttagcatcagaagacaggtacgtgtatccagaaccggtcgctcctgtaccg
ccggagaccgactacaatgcacagagcttgaaggaagccagcagcgtaggagagattcct
tatgacacccaagatgctaatggcttcatcagcaacgattacagcaccgccaacatgaat
ggagggagcgtcgcagtcagcccgactccctacaccccaaatgggtacaacgggaacgga
tactccagctacaatgagaacggaagcgtcatcagcatcaatggaaatggaagcacgttg
aacggcggcgatgaaaacggcagctcactgacgagctacaatgggaacaatggctacagt
ggaaatgagagcagaggcgcccagtttattaggcgaaggctacttcctaacatccccaaa
ggtcgtacgcctgcctttaacctgcagtgtctgaggcctcagagcagccaggatgacctc
cccatcccaggaacctatcgtggaaacacatcccaatccaggtcccgtccacagacccag
caaagcatcgagccccggcccggcagcgtgtcctcgatgtctacggcctcctgggtaaac
acaacggcagctggcgctgctcctgtcccgggaataatcccaccctcggggcgcaggggc
aagctcatctactctcctatgatgctggtggacgaagccaccggcagcagtcagccgatg
tggagcgacggctctgccagcctccccgcaggaagccagcccggctggcaccccggacag
acgaggacctacaccagcatgaggatgccgccggtcaatcagggctacgtgaacaaaggc
agtgccgacagtctggttgagtcgatcctgatctccgagggtctcggcgtctacgccagg
gaccccaagttcgtgaccttcgccaagagggagatcgctgaagcctgcaacatgagcatg
gacgacatggagaacgctgccaccgacctgatagctcgcggcgccagtcagtccctctct
cgtttcgaggaggagctggccgatgaaatgaactgtgtgatttcttactga
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integrated database retrieval system
