Hippoglossus stenolepis (Pacific halibut): 118111996
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Entry
118111996 CDS
T08308
Name
(RefSeq) protocadherin gamma-C5 isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118111996
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118111996
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_CELSR2_9th
Cadherin_C_2
Bact_surface_Ig-like
DUF5753
Motif
Other DBs
NCBI-GeneID:
118111996
NCBI-ProteinID:
XP_035016803
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Position
7:complement(15709323..15977678)
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AA seq
989 aa
AA seq
DB search
MDSGQRKRSRGGRLWSICLYLAGLSCASPQLSYSVSEELSPGSVVGNIAKDLGLTAQRID
QRRLRVVSDSTTQYFEVKQATGDLVIKQSIDREQMCELSLTCTLHLQIVLDDPLEIHRVV
VVILDVNDNAPHFSTSNISLEISEAAAPGTKFRLESAHDPDVGTNSLRTYHLAANDFFTL
NVETKSDGSKFPELVVDKPLDRETQAKFRLMLTAVDGGQPEKSGSTLMLIKVLDVNDNAP
VFEESVNKVRLLENVAQGTLITKLNATDADSGNNGEISFLFSKYTPEGVLRLFSVDSKSG
EIRVKGHVDYEKATAYHITVQARDGGSPAMEGSCNVIVDIVDVNDNAPEVTVTSLTSPIR
EDSAPETVIALISARDLDSGVNGEVTLTVQQGLPFKLISAFGMHYSLITAGNLDRETVPE
YTVVIRATDAGSPRLSSQITFVVELSDVNDNAPTFSQKSYSVDIPESNAPSAPIAAVSAT
DPDLGDNARISYSILPSMVQGSSIASYVYINPDNGHIYSMRSLDHEQLNAFCIEVQARDA
GVPPRTANVTVHVFVVDVNDNAPVIVHPSYPKEKGLQLTVPPSAGPGHLINKLVGVDADS
GHNAWLFYSIAPGPNAGMFRIGPHTGELRTARKWAEEEEGSAYDILVIIQDNGEPPKSCS
VNITVTVDEKSTAVDAPASPRHTPFYHRTGMSDITLYLIISLACVSAVSFITFVALMIRC
LRHRSPGLGDSDCCCYDSHRSTRYHQRPSKDLHLQLNTDGPIRYMEVVGGSQDPNTRTYR
PCYSTLSSRSDFVFMKTPMLSHNNTLNMTLSRKHLMNSVNEQKPPNNDWRFTQGQRPGPS
GPHMPYGTHIRWTPNNGNRATGGPEVAMGTGPWPQPPTEAEQLQALMAAANEVSEATATL
GPGTMGLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTSNPQQQQQQQQATAQQAAQQALP
PPQASAQPEPPKAAQTPASKKKSTKKEKK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggactccgggcagaggaagcgctccagaggagggaggctgtggagcatttgcttgtat
ctcgctggcctctcctgtgcgtcccctcagctcagctattccgtatcggaggaactaagc
ccgggctccgtcgttgggaatatcgcaaaggatttgggtctgactgctcagcggatcgat
cagaggaggctgcgggtggtctcggattccacgactcagtacttcgaggtgaagcaggcg
accggcgatttggtcatcaaacaaagtatagacagggagcaaatgtgcgaactgagttta
acgtgtacgctccaccttcaaatagtccttgacgatccattagagatccatcgcgtggtg
gtggtcattctggatgtgaatgacaacgcgccgcacttttcgaccagcaacatttctttg
gagatatccgaggcggccgcgccgggcacaaagttccgcctggagagcgcgcacgaccca
gacgtggggaccaactcgttacgcacgtaccatctcgccgcaaatgacttttttactttg
aacgtggaaactaaaagcgacggcagtaagtttccagagctcgtggtggataaacctctg
gacagggagacgcaggccaagtttcgcctgatgctcacggctgtagatgggggacagccg
gagaaatctggctcaacacttatgctcattaaagttctggatgtaaatgacaatgcgccc
gtctttgaagaatcagtgaataaagttagactattagaaaatgttgcacagggcacttta
atcacaaagttgaacgcaactgacgcggattccggcaacaatggagaaatctcttttctt
tttagtaaatatacaccggagggggttctcagacttttcagtgtggattctaaaagcggg
gagatccgtgtgaagggccatgtggactatgagaaggccactgcgtaccacatcacagtg
caggccagagatgggggctctcctgctatggagggctcatgtaacgtcatagtggacatc
gttgatgtgaatgacaacgcaccagaggtcacagtgacgtcactgaccagtcctattaga
gaggactcagcaccagagacagtgatagcgctcataagtgcccgggacctggactcaggt
gtgaatggagaggttacattgactgtccaacaaggtttgccatttaaacttatttcagct
tttggcatgcattacagcctcatcacagctggcaacctggaccgtgagactgtcccagag
tacacagtggtcatcagggccactgacgcgggttcaccgcgcctttcatcacagataacc
tttgtggtggagctctctgatgtgaatgacaatgctccaactttctctcagaagtcatac
tctgtggacatcccagagagcaacgctcctagtgcccccatcgcagctgtttcagccact
gacccagacctcggtgacaacgctcgcatatcgtactccatccttcccagcatggtccag
ggctcatccattgcttcttatgtctacattaacccagataacggtcacatctacagcatg
cgctctctggatcatgaacagctcaatgcattctgtattgaggtgcaggcccgggatgct
ggggtgcccccacggaccgccaatgtcactgtgcatgtgtttgtggtggatgtgaatgac
aatgcaccagtgattgtacacccctcctacccaaaagagaaaggattacagctcactgtg
cccccatctgcaggcccagggcacctcataaataaacttgtaggggtggatgcagacagt
ggtcacaatgcatggctgttttactccatagccccgggaccaaatgctggaatgtttcgt
attgggccacacacaggtgagctccgcacagcccgcaaatgggccgaggaggaagagggc
tcagcctatgacattttggttatcattcaggacaatggtgaaccgcccaagtcttgttct
gtgaacattacagtaaccgtggatgagaagagcacagccgttgatgctccagcaagccct
cgccacacgcccttttaccaccgcacagggatgtcagacatcaccttgtaccttatcatc
tctctagcctgtgtatcagcggtctcctttatcacctttgttgccctcatgatacgctgc
ctaaggcaccggagcccgggcctgggagactccgactgctgctgctacgatagccacagg
tccacccgctaccatcagaggcccagcaaggacctgcacctgcagctcaacactgatgga
cctatacgctatatggaggttgtgggagggtcccaggatccaaacacacgcacttacagg
ccctgctactccaccctgtccagccggagtgactttgtatttatgaagacaccaatgctg
agtcacaacaacacactcaacatgacactcagcaggaagcaccttatgaactcagtcaat
gagcaaaaaccccccaacaatgactggcgcttcacccagggacagcgacctggacccagc
ggtccccacatgccatacggtacacacatacgatggacgccgaacaatgggaacagggca
actggaggacctgaggttgccatgggaactggtccctggccccagccccctactgaggct
gagcagctccaggccctgatggctgcagcgaacgaagtgagtgaggctacagccaccctg
gggcctggcaccatgggccttagcacccgctacagcccccagttcactctgcagcacgtc
cccgattaccgccagaacgtctacatccccggcagcaccgccaccctcacctccaacccc
cagcagcagcagcagcagcagcaggccaccgcccagcaggccgcccagcaggcgctccct
ccaccccaggcctcggcccagcccgagccccccaaggccgcccagacccctgcctccaag
aagaagtccaccaagaaggagaagaagtag
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