Hippoglossus stenolepis (Pacific halibut): 118112011
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Entry
118112011 CDS
T08308
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin gamma-C5
KO
K16497
protocadherin gamma subfamily C
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118112011
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118112011
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
DUF7276
Motif
Other DBs
NCBI-GeneID:
118112011
NCBI-ProteinID:
XP_035016877
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Position
7:complement(15742321..15745358)
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AA seq
821 aa
AA seq
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MTKRIGYRDWRWQALWWHHFFLLWSITDAQTRYSIPEELKQGSVVGNLAKDLGLGLSEIF
DRKLRVASEAGKQYFTVDAGKGELVVNDRIDREALCGQSASCVLPLQVVVENPLRSHRIE
VEIRDINDNSPRFLTQEINLKIPESVALGKRFPLESAEDPDVGSNSLKTYSLSKNDYFSL
KFKETKNGKAVPELVLEKTLDREKNALHHLLLTALDGGNPVTSGTCKITITVLDINDNFP
VFNENEYKVSLKENSTKGTFVIKLTAKDADDGLNGEVKYSFGSRTPDFVLSTFEINDMTG
DIVLKGLLDYETSKSYLIDITAKDKGVPEMEGDCRVQLDVEDINDNAPDIVLTSKPVPVR
EDAPSGTVVALISARDLDSGNNGKVNLRLPKGSHFTLKPSFSNNYELVTSAALDRESFSE
YNIEITATDSGSPPLSSKKIIPVSITDVNDNPPVFSQPSYNVYLKENGVPGSILYSVSAS
DLDFGENAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDQ
GSASLGSNTTVHVFILDQNDNAPXLLISSAALGSFSHQRMPRSAKAGHLVTKMTAVDADS
GHNAWISHKVAEATDASLFTVNLYTGXVRTKRAVSEQDDSSQRLLIEIKDDGDRSXSSTV
TVSILLEDGLHEPILDLRQKVTEPSKKTGRITLYLILLLASVSVLSVVTFLILAVKCIRS
SRSSGSCCMTQGDYDGYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCMSPMSE
YSDFTMIKPSSTTDFKEVISVLDASLPDSTWTFESQQVRRE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagagaataggataccgagactggagatggcaggcgctttggtggcatcacttc
tttctcttgtggagtataacagacgcacagactcgttacagcatcccggaggaactaaaa
cagggctctgtggtaggaaatctagccaaagatcttggtttgggactatctgagattttt
gatcgcaagctgcgagtcgcctctgaggctggtaagcagtatttcactgtggatgcgggg
aagggcgagctggtggtgaatgacagaatagacagagaggctttatgtggacaaagcgcc
agctgtgttctacctctgcaagtagttgttgaaaaccctttgcggtcgcatcgaattgaa
gtggaaatcagagacataaatgacaattctcctcgttttctaacacaggagattaacctt
aaaattccagaatccgttgcgctcggcaaacgttttcctctggagagcgcagaggaccct
gatgttgggagcaattctttgaaaacctactcgctaagcaaaaacgattatttttctcta
aagtttaaagaaactaaaaatggaaaagcggtcccggaattagtgttagaaaaaacatta
gaccgggaaaagaatgctctccatcacctgctgttgacagcattagatggaggaaacccg
gtcacgtctggaacctgtaagatcaccattactgtacttgatattaatgataattttcca
gtatttaacgaaaatgaatataaagtttctttaaaagagaacagcaccaaagggacattt
gtcatcaaactcacagccaaagatgctgacgatggtctaaatggtgaagtgaaatattct
ttcgggtcccgcactccagactttgtgttatcaacatttgaaattaatgatatgacaggt
gacatcgttttaaaaggtttattagattatgagacttctaaatcttacctgatcgatata
actgctaaagacaaaggcgtccctgaaatggagggtgactgtcgtgtgcagctggatgtg
gaggacataaatgataatgcgccagatattgtgttgacttcaaaacccgtgcctgttcgc
gaagacgcaccaagtggcacagtggtggcattgatcagtgcacgagaccttgactccggt
aataacggtaaagtgaatttgcgtttacccaaaggttctcatttcactctaaaaccctca
ttttctaataattatgaactggtaaccagtgctgctttagaccgagagagtttctcagaa
tataatattgaaattacagccactgactcaggctctcctcctctatccagtaagaaaatt
attcctgtcagcatcactgatgtgaatgacaaccctcctgtattctctcagccctcctat
aatgtgtatttaaaggagaatggggtaccaggatctatactgtactcagtatcagcctct
gacctggattttggtgaaaacgctaaaatctcttactctatactggactctaaagtgcag
gacgtttctgtctcatcgtatgtttacattaactcagataacggcagcatctacagcatg
cactcgtttgactatgagaaactgaaggtgtttcagattcaggttcaggcaaaggatcag
ggctctgcgtctctcggcagcaacaccaccgtccatgtttttatcctggaccagaacgac
aacgcccccncgttgcttatctcctccgctgccctgggctccttctctcaccagaggatg
ccccgctccgctaaagcgggtcacctggtcactaagatgacggccgtggacgcggactcg
ggccataacgcctggatctcccacaaagtggcggaggccacagacgcctctctgttcact
gtcaatctgtacacaggannggtgaggactaaacgcgctgtgtccgagcaggacgactcc
tctcagaggctgcttatagagatcaaggacgacggggaccggtccnagtcctccaccgtc
acggtgtccatcctgctggaggacggcctccatgagcccatcttagacctccgacagaaa
gtgaccgagcccagcaagaaaactgggagaatcaccttgtatttgattcttctcctggcc
tcggtgtccgtgctgtctgtggtgacttttctcatcttagcggttaaatgcatcaggagc
agcagaagcagcggtagttgctgcatgacacagggtgactatgatggttacaagaacccc
aacagaaacctgcagattcagctcaacactgatggacccataaagtacgtggaggtcctg
ggaggagacatgttgtctcagagtcagtccttcaggtcctgtatgtctccaatgtccgag
tacagtgacttcactatgattaagcccagcagcaccactgactttaaggaggtgatcagt
gtcctggatgcgtctttaccggacagcacctggacctttgagagccagcaggtgaggaga
gagtaa
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