Hippoglossus stenolepis (Pacific halibut): 118112228
Help
Entry
118112228 CDS
T08308
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118112228 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118112228 (kdm2ab)
04121 Ubiquitin system [BR:
hsp04121
]
118112228 (kdm2ab)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118112228 (kdm2ab)
Enzymes [BR:
hsp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
118112228 (kdm2ab)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
118112228 (kdm2ab)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118112228 (kdm2ab)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
118112228 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
118112228 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
LRR_6
Cupin_8
SR-25
Cupin_1
C1_1
LRR_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
118112228
NCBI-ProteinID:
XP_035017264
LinkDB
All DBs
Position
7:complement(14816520..14830521)
Genome browser
AA seq
1303 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCDRFRSDLVKHMEGKDF
TFEYIQREGLREPIIFKTADGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRIQLNQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQKYSLGKG
LTRADVEANDHPGNGNSNGVDSDTENAEIKLKQPKKEEEEEDTEEDGAAQLTTPQHLMTP
FELEGLCNLLGKLEELPVHKKCVPAGIQDAAALLEDMRAVLKEHSNDNPKLSYTGEPIVK
WPKRPSWYEPSTPPPPVIYRPRLAPSLHKPLGQRPTKRSSISALRRRRVRCKRCAGCCRK
ECGNCQYCHDMRKFGGPGRMKKGCITRQCLTPALPNTARCAICREGELDESDPSTFSLME
CSVCSQIAHRQCIKEPGEGKINDDLPSCWECPKCCQGKSSGSESSSDEDSGESESSSSLP
PSKLAYREGIGVSDGVRRGVCTGPQSRPTAPPPSQKLLLQHQQNRKRASALELRLKKKIK
LERSKLLVKQSALDRSPRLLSSRLLSRLRSPTSRLSQGRGLYHGSPGRTQSFLQQQSSRS
LVLESKGEPRRGRGRGVRLRGGGAGRGSGGGRGHGDLEEESDDSSSSSSSSSTSSSSSSS
DEEEEREQNSGKGGDKENQPQSRRGQAAKEEEEAIEVANQNGAEDEDEEEIEQNSQTGDK
DGSYLKVTLQRPTKTKRDPSAIVPKLEAIAPQAATSTLPNQTRPLARPPIRIRGACPDQY
SNRHTPPHTRSGHTDSRTSHSERLEVSKRQRPNRPAKLSNGASCSSSSELTHLRIPLSAL
QEGGSETDRESGLGGPGCEREVWVSVFRYLNRADLCICMAVSKNWYKWCLDKRLWARIDL
SIKRTVTPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPALKDLMVAGCSWSSISAL
CSSGCPLLRSLDLRYADGVKDSQIRDLVSPPGCDNRSQLRTMQCLRLAGLDITDSTLRLV
IRHMPHLTKLDLSHCNSLTDHSINLLTAVGSSTRNTLTELNLGGCSKLTDTCLKYLRRLS
CISLLDLRGCKGVSRKACEAFISELSVNTLYCLSDEKLIQRIS
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcctcatacacggtacagcaaacgcctgcgtacaggcacacggcgccgctac
caggacgatggaatctcagatgatgaaattgaagggaaacgaatgtttgacctggatgaa
aagttgcagtgcgacaggtttcgctcagatttggtcaaacacatggaaggcaaagatttc
acatttgaatacatccagagggaagggctcagggaaccaatcatctttaagacagctgat
ggtcttggaatacaaatgccagaccctgacttcagtgtgagtgatgtcaagttgtttgta
ggtagtcgacgaatcgttgatgtgatggacgtgaacacccagaagggaatcgagatgtca
atggctcagtggcgacgctactatgagacgccaccatcagaaagagaaaaactctacaat
gtcatcagcctggagttcagccacaccaggctggagaatctagtcaaacgaccagcttcg
gtggaccttattgactgggtggacaacatgtggccgcgtcatctcaaggagcgacaaaga
gactccacaaacgccatcatagacatgcactatcccaaagtacagaagtattgtctcatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcacttcagtctggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacaccacagaacctggag
atgtatgagaactgggttttatcaggaaagcagggagacatcttcttgggggacaagtgt
catgactgtcagaggatacaactcaaccagggcaacaccttcataatcccatcagggtgg
atccatgctgtgtacacgccagaggacacgttggtgtttgggggaaatttcctccacagc
tttaacatcccgatgcagctcaacatctacagcattgaggatcgcacacgggtgccagcg
aagttccgttaccctttctactatgagatgtgctggtatgtcctggagagatacctctac
tgtctgacaaacatctcacacctcacacctgagttccagaaatactcccttggcaaagga
ctgacacgggctgacgttgaagccaacgatcatcctgggaatggcaactccaatggagtt
gacagtgacactgaaaatgcggagatcaaattaaaacaaccaaaaaaagaagaagaagaa
gaagacacagaagaagatggagcagctcaacttaccacaccacagcatttgatgaccccc
tttgagctggagggactgtgcaacctcttggggaaactggaggagctgccagtccacaaa
aagtgtgtccctgcaggcatccaggatgctgcagccctgctcgaggacatgagggctgtt
ctgaaggagcattcaaatgataaccccaagctgtcctacactggagagcccattgtcaag
tggcccaaaagaccgtcatggtacgagccctccactcctcctccccctgtcatttaccgt
cctcgcttagccccaagcctccacaagcctcttggtcagcggcccaccaaacgctcctcc
atctctgccctgaggagaagacgggtgcggtgcaagcgctgtgccggctgctgcagaaag
gagtgcggcaactgccagtactgccacgacatgaggaagtttggtgggcctggacgcatg
aagaagggctgcatcacgagacagtgtctaacgcctgctttgccaaacacagctcgatgt
gccatatgtagagaaggtgaattagatgaatcggatccgagcactttctcactcatggag
tgctccgtctgctcgcagattgctcatcgtcagtgcattaaggaacctggtgagggaaag
atcaatgacgatttacccagttgctgggaatgtcccaaatgttgtcaaggcaaaagttca
ggatcagagtcttccagcgatgaggatagtggggagtcagagagctcttcctcgttgcca
ccatccaaacttgcataccgtgaaggcattggtgtcagcgatggggtgagacgaggggtg
tgtaccggaccacaatcccgacccacagcaccaccaccttctcagaaactcttactgcag
catcaacagaatcgcaaaagagctagtgcactggagcttagacttaagaagaagataaaa
ctggagcgtagcaaactcttagtgaaacagtcggcactagatcgttctcctaggctgctg
agctccaggctgctgtccaggctgcgctctccaaccagcagactatctcagggcagaggt
ctttaccacggctctccaggaaggacccagtccttcctccagcagcagtcttcccgcagt
ctggtacttgagtctaagggagagccccgcagagggaggggaagaggggtgaggctgcgg
ggaggaggagcaggaagaggttctggaggtggcagaggtcatggagacttggaggaggag
agtgacgacagcagcagcagcagcagcagcagctccaccagcagcagcagcagcagcagc
gacgaggaagaggagagggagcagaacagtgggaagggaggggataaagagaaccagcct
cagtcgagaagaggacaagcagccaaagaagaagaggaagcgattgaggtggccaaccaa
aacggtgcagaggatgaagatgaggaggagattgagcaaaacagtcaaacaggggacaag
gatggctcatatcttaaagtgacactccaaaggccaaccaagaccaagcgggacccatca
gccattgtccccaagctagaggctatcgcccctcaagctgctacttccacattacccaat
cagactagacccctcgccagacccccaattagaattcgtggcgcctgtcctgatcaatac
tccaatagacacacacccccacatactcgtagtggacacacagactctcgcacatcccac
tcagagaggctggaggtctctaaaagacagaggccaaacaggccagctaaactgagcaat
ggtgcttcctgttcttcatcctcagagcttacccatctccgcatccctctgtccgccctg
caggagggagggagtgagacggaccgggagagcggtcttggtgggccgggatgtgagcgg
gaggtgtgggtgtctgtcttccgctacttaaatcgagcagatctctgcatctgcatggct
gtcagcaagaactggtacaaatggtgtttagacaagcggctttgggcgcggattgacctg
agcatcaagcgcactgttactcctcaggccctaacaggcatcataaagagacagcctgtg
acgctcgatctgtcatggaccaacatctctaaaaagcagctcaactggcttgttggacgc
ctgcctgcgcttaaggatctgatggtggcaggttgttcctggtcgtctatatcagctctc
tgctcctctggttgccctctcctccgttctctggacctgcggtacgcagacggggtcaaa
gactctcagatcagggatcttgtcagccctccaggctgcgacaatcgcagtcagttgcgg
accatgcagtgtttacgactagcaggcctggacatcactgactccactctgcgcctggtg
attcgccacatgccccatctaacaaaactggacctctcccactgcaacagcctcactgac
cactccatcaacctgctcacagcagtgggctcctccacccggaacacgctgacagaactc
aaccttggaggctgcagtaaactgacagacacgtgtctaaagtatctccgccgcctctcc
tgcatctcactgcttgatctgcgaggctgcaaaggggtctcccgcaaggcctgtgaggcc
ttcatctccgagctgtcagtcaacacgctctactgcctatcggatgaaaaactgatccag
aggatatcctaa
DBGET
integrated database retrieval system
