Hippoglossus stenolepis (Pacific halibut): 118114904
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Entry
118114904 CDS
T08308
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118114904 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118114904 (kdm2ba)
04121 Ubiquitin system [BR:
hsp04121
]
118114904 (kdm2ba)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118114904 (kdm2ba)
Enzymes [BR:
hsp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
118114904 (kdm2ba)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
118114904 (kdm2ba)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118114904 (kdm2ba)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
118114904 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
118114904 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_FBXL15
LRR_SKP2
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
118114904
NCBI-ProteinID:
XP_035021545
LinkDB
All DBs
Position
9:9841654..9851769
Genome browser
AA seq
780 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPKMGTTSAVKLPSNRSSSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEDK
FNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPVKEEGDVSSGAKRRTDREETPRYRPEESLHRQPPLLSPSSLPRP
RPEDKLRKKRKLFDDDDEDDLSVRKKEKSDDPYFSKLLHHIKTEEEDEDAYEEEDEEGRD
PQFRIGVERKRRLGEAEEEGADRDSKNELLNPCIKTPVGDSDQSHSSSPQAGPSSEGGSE
TQEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEPK
RLFRNGNELGDQRPHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPRSPPKCV
QMERHVIRPPPISPPPDRLPLKDSKMHIIQREIWMKIFRYLTHQELCVCMRVCKTWNRWC
CDKRLWTKIDLNRCTSITPLMLSGVIRRQPVYLDLSWTNISKKQLSWLINRLPGLRVLKL
SGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVE
TLRLAGLDITDTSLRLVSRQMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKMACERFMAEMSVSVPFRLKEEKLLQKTS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagcggagacgatgaggaatatgattcagagtccgagcagcagcgg
gcagccaaccggccaaagcccaagatggggacgacgtcagccgttaagctgccgtccaac
cgcagctcgtccggcgccagacgcaggaggacgcgctgccgaaagtgcgaggcatgtctg
cggaccgagtgtggagagtgtcacttctgcaaggacatgaagaagttcggagggccgggg
cgcatgaagcagtcctgcattatgagacaatgcattgcgcccgtccttcctcacacggcg
gtgtgtgtagtgtgtaaagaggccggcaaggaggacacactggaggaagaggaggacaag
ttcaactttatgttgatggagtgctccatctgcaacgagattgtccaccctaactgcctc
aaggtgagcgacgcgtcgggggtggtgaacgatgaactccccaactgctgggaatgtccc
aaatgcaaccacgctgggaaaagtggaaaagtattgaagcaaaaaaggggcccaggcttc
aagtacgcctccaacctccccggctctctgctgagggaacagaagcctgtgaaggaggag
ggagacgtgtcctctggagccaagaggagaacagacagagaggagacgcccaggtacaga
cccgaggagtctctacaccgacagccgccactactctctcccagcagcctgcccaggccc
aggcctgaggacaaactgaggaagaagaggaagctgtttgatgatgatgatgaggacgat
ctcagtgtgaggaaaaaggaaaagtcagatgacccttatttttccaaacttctgcaccat
atcaaaacagaagaggaggacgaagacgcatatgaggaagaagacgaagaaggaagggac
cctcaattccggattggtgtagagaggaaacggcgattaggagaagctgaagaagaaggg
gctgacagggactcaaagaatgaacttttgaatccctgcattaaaacgcctgttggagac
agtgaccagtctcacagcagctctccgcaggcaggccccagcagtgagggtggaagtgag
acccaggaaaaaggtccgcgtcctaaagctcgccgcaagcggcgtttgcctaacagggag
ctgagccgagaactgagcaaagcactgaatcaggaaatccagaagacggaggactgcctg
gcgaacgagaaccgccaacccctgaaggtggagccagagacggaaaacgaggagcccaag
aggttgttccgcaacggtaatgaacttggggatcagaggccacacctcaagaccaaagag
atgaacgggaccccgtgggagctgcggcacttctacccgagtcagatcactccactaggt
ttcaaccggagcacgccgaccaaccgcccggtgccgccacgctccccacccaagtgtgtc
caaatggagcggcacgtcattcgcccccctccgatcagtccgcctcccgacagactgcct
cttaaagacagtaaaatgcacatcatacagcgtgagatctggatgaagatctttcgctac
ctcacacaccaggagctgtgtgtctgcatgagagtctgcaagacatggaacagatggtgt
tgtgataagagactgtggacaaagatcgatctgaaccgctgcacctccatcactccactc
atgctgagtggggttatccgccgacagccggtttacctggacctcagctggacaaatatt
tccaagaaacaattaagctggcttatcaatcgattgccaggtctgcgagtgttaaagttg
tctgggtgctcttgggctgctgtgtctgcgctctgcacctccagctgccctctgctgcgc
accctggatgtccagtgggtggagggacttaaagatgcacagatgagggacctcctctca
ccccccacagacaacagaccaggtcaactggataaccgctgcaagttgcggaatgttgag
accctgcggctggcggggctggacatcacagacacatctttacgtctcgtcagtcggcag
atgcctttgctgtccaggctggacctgagttactgcaaccacatcaacgaccagtcagtc
aacctactgacagcagcagggaccacgaccagagactctctaacagaaatcaacctgtct
gtttgtaaccgcgtcacagaccattcccttaactttttcaagcggtgtggaagcatctgt
cagatagaccttcgcttttgcaagcaggtgaccaagatggcctgcgaaaggttcatggca
gagatgtctgtgagcgtgccgttcagactgaaagaggagaaactgctgcagaagacaagc
tag
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