Hippoglossus stenolepis (Pacific halibut): 118114904
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Entry
118114904 CDS
T08308
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118114904 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118114904 (kdm2ba)
04121 Ubiquitin system [BR:
hsp04121
]
118114904 (kdm2ba)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118114904 (kdm2ba)
Enzymes [BR:
hsp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
118114904 (kdm2ba)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
118114904 (kdm2ba)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118114904 (kdm2ba)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
118114904 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
118114904 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
DUF7885
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
118114904
NCBI-ProteinID:
XP_035021545
LinkDB
All DBs
Position
9:9841654..9851769
Genome browser
AA seq
780 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPKMGTTSAVKLPSNRSSSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEDK
FNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPVKEEGDVSSGAKRRTDREETPRYRPEESLHRQPPLLSPSSLPRP
RPEDKLRKKRKLFDDDDEDDLSVRKKEKSDDPYFSKLLHHIKTEEEDEDAYEEEDEEGRD
PQFRIGVERKRRLGEAEEEGADRDSKNELLNPCIKTPVGDSDQSHSSSPQAGPSSEGGSE
TQEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEPK
RLFRNGNELGDQRPHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPRSPPKCV
QMERHVIRPPPISPPPDRLPLKDSKMHIIQREIWMKIFRYLTHQELCVCMRVCKTWNRWC
CDKRLWTKIDLNRCTSITPLMLSGVIRRQPVYLDLSWTNISKKQLSWLINRLPGLRVLKL
SGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVE
TLRLAGLDITDTSLRLVSRQMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKMACERFMAEMSVSVPFRLKEEKLLQKTS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagcggagacgatgaggaatatgattcagagtccgagcagcagcgg
gcagccaaccggccaaagcccaagatggggacgacgtcagccgttaagctgccgtccaac
cgcagctcgtccggcgccagacgcaggaggacgcgctgccgaaagtgcgaggcatgtctg
cggaccgagtgtggagagtgtcacttctgcaaggacatgaagaagttcggagggccgggg
cgcatgaagcagtcctgcattatgagacaatgcattgcgcccgtccttcctcacacggcg
gtgtgtgtagtgtgtaaagaggccggcaaggaggacacactggaggaagaggaggacaag
ttcaactttatgttgatggagtgctccatctgcaacgagattgtccaccctaactgcctc
aaggtgagcgacgcgtcgggggtggtgaacgatgaactccccaactgctgggaatgtccc
aaatgcaaccacgctgggaaaagtggaaaagtattgaagcaaaaaaggggcccaggcttc
aagtacgcctccaacctccccggctctctgctgagggaacagaagcctgtgaaggaggag
ggagacgtgtcctctggagccaagaggagaacagacagagaggagacgcccaggtacaga
cccgaggagtctctacaccgacagccgccactactctctcccagcagcctgcccaggccc
aggcctgaggacaaactgaggaagaagaggaagctgtttgatgatgatgatgaggacgat
ctcagtgtgaggaaaaaggaaaagtcagatgacccttatttttccaaacttctgcaccat
atcaaaacagaagaggaggacgaagacgcatatgaggaagaagacgaagaaggaagggac
cctcaattccggattggtgtagagaggaaacggcgattaggagaagctgaagaagaaggg
gctgacagggactcaaagaatgaacttttgaatccctgcattaaaacgcctgttggagac
agtgaccagtctcacagcagctctccgcaggcaggccccagcagtgagggtggaagtgag
acccaggaaaaaggtccgcgtcctaaagctcgccgcaagcggcgtttgcctaacagggag
ctgagccgagaactgagcaaagcactgaatcaggaaatccagaagacggaggactgcctg
gcgaacgagaaccgccaacccctgaaggtggagccagagacggaaaacgaggagcccaag
aggttgttccgcaacggtaatgaacttggggatcagaggccacacctcaagaccaaagag
atgaacgggaccccgtgggagctgcggcacttctacccgagtcagatcactccactaggt
ttcaaccggagcacgccgaccaaccgcccggtgccgccacgctccccacccaagtgtgtc
caaatggagcggcacgtcattcgcccccctccgatcagtccgcctcccgacagactgcct
cttaaagacagtaaaatgcacatcatacagcgtgagatctggatgaagatctttcgctac
ctcacacaccaggagctgtgtgtctgcatgagagtctgcaagacatggaacagatggtgt
tgtgataagagactgtggacaaagatcgatctgaaccgctgcacctccatcactccactc
atgctgagtggggttatccgccgacagccggtttacctggacctcagctggacaaatatt
tccaagaaacaattaagctggcttatcaatcgattgccaggtctgcgagtgttaaagttg
tctgggtgctcttgggctgctgtgtctgcgctctgcacctccagctgccctctgctgcgc
accctggatgtccagtgggtggagggacttaaagatgcacagatgagggacctcctctca
ccccccacagacaacagaccaggtcaactggataaccgctgcaagttgcggaatgttgag
accctgcggctggcggggctggacatcacagacacatctttacgtctcgtcagtcggcag
atgcctttgctgtccaggctggacctgagttactgcaaccacatcaacgaccagtcagtc
aacctactgacagcagcagggaccacgaccagagactctctaacagaaatcaacctgtct
gtttgtaaccgcgtcacagaccattcccttaactttttcaagcggtgtggaagcatctgt
cagatagaccttcgcttttgcaagcaggtgaccaagatggcctgcgaaaggttcatggca
gagatgtctgtgagcgtgccgttcagactgaaagaggagaaactgctgcagaagacaagc
tag
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