Hippoglossus stenolepis (Pacific halibut): 118116277
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Entry
118116277 CDS
T08308
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04115
p53 signaling pathway
hsp04145
Phagosome
hsp04148
Efferocytosis
hsp04350
TGF-beta signaling pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
118116277
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118116277
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
118116277
04148 Efferocytosis
118116277
09143 Cell growth and death
04115 p53 signaling pathway
118116277
09144 Cellular community - eukaryotes
04510 Focal adhesion
118116277
09142 Cell motility
04820 Cytoskeleton in muscle cells
118116277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118116277
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118116277
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Phagocytosis
Opsonins
118116277
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118116277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
EGF_CA
EGF
TSP1_ADAMTS
cEGF
TSP1_CCN
Spectrin_SESTD1
Motif
Other DBs
NCBI-GeneID:
118116277
NCBI-ProteinID:
XP_035023718
LinkDB
All DBs
Position
10:complement(14853414..14862340)
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AA seq
1172 aa
AA seq
DB search
MMLCGIFLLLMLWRCEGARLAENRDDNSVYDLFDLAQVGKRNHGVSVVKGADPYSPAYKV
LNADLIPPVPDSIFRDLLDSIQAERGFLLLANLKQFKRSRGSLLTIEKSDGSGPIFEIIS
NGKASTLDLVYSTVSQQQVVSIEDADLATGHWKNITLFVQDDRAQLFVGCEEINVSELDV
PIQKVLTQEVADIARLRVGKGAVKERFMGVLQNVRFVFGTTIEAILRNKGCQSGASLTDV
MTLDNPVNGSSPAIRTDYTGHKSKDVQSVCGLSCEDIASMFKELKSLGVVVKQLSQKLGK
VSEDSNLLMNQMNIHNGVCFHNGIVHKDKDEWTVDGCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCTVTCGEGVITRIRLCNSPTPQLDGRDCQGDG
RQTEICQKSPCPINGGWGPWSPWDTCTVTCGGGVQTRKRLCSDPVPKYGGKDCVGDATTS
QLCNKQDCPIDGCLSSPCFSGTKCTSFPDGTFRCGKCPLGYRGNGVICKDIDECKEVPDA
CHTHNGIHRCENTEPGYNCMPCPTRFSGPQPFGRGVEQATAKKQVCTPRNPCQDGTHDCN
KNAKCIYLGVFSDSMFRCECRPGYAGNGLICGEDTDLDGWPNTNLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDECDHDDDNDRIPDDRDNCPRVYNPAQYDADRDDVGDSCDNCV
YEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL
EHNPDQFDSDSDLIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDEKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVLDINDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSQTPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLIHRPKTGLIRVVMYEGKRIMADTGNI
FDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgtggcatctttttgctgttgatgctttggaggtgcgaaggtgcaagactg
gcagagaatcgtgatgataacagtgtatatgacttattcgacctggcacaagtcggcaag
agaaaccacggggtgagcgtggtgaaaggtgcggacccctacagccccgcatacaaggtc
ctgaacgcagacctgatcccccccgtcccagacagcatcttcagggacctccttgactcc
attcaggccgagaggggcttccttctcctcgccaacctcaagcagttcaagaggagccgc
ggcagcctcctcaccatcgagaagagcgatggatccggacccatctttgagatcatctcc
aacggcaaggcgagcaccctggacttggtctactcgaccgtgagccagcagcaggtggtg
tccattgaggacgcagacttggccaccggacactggaagaacatcacattgttcgtgcaa
gatgaccgcgctcagctctttgttggctgcgaggagatcaacgtgtcggagctggatgtg
cccatccagaaggtgctgacccaggaggtggcagacatcgccaggctcagggttggaaag
ggggctgtaaaggaaagattcatgggagtccttcagaatgtgcgctttgtctttgggaca
actatcgaagccatactgagaaataagggttgccagagtggagcatccttaactgatgtc
atgaccttggacaacccagtcaacggctccagtcctgccattaggactgattacaccggc
cacaaatccaaagatgtgcagtctgtctgtggcctctcctgtgaggacatcgccagcatg
tttaaggagctcaagagtctcggtgtggttgtcaaacagctgtcgcagaagctcggcaaa
gtgtctgaggacagcaatctgctgatgaatcaaatgaacatccacaatggagtttgcttc
cacaatggcatcgtgcacaaggacaaagatgaatggaccgtggacggctgcactgagtgc
acctgccagaactctgctactgtgtgtcgcaaaatctcctgccctctgatcccatgtgct
aatgccaccgtgcccgacggagagtgctgccctcgctgtggaacaccgagtgactatgct
gaggatggatggtctccctggtctgaatggacccattgttcagtgacttgtggtcgtggc
atccagcaacgtggacgctcctgtgaccgcatcaacagcaattgtgagggcacatctgtc
cagacccgtgactgctatcctcaggaatgtgacaaacgcttcaaacaggatggtggttgg
agtcactggtccccctggtcttcatgcactgtgacctgtggcgagggggtcatcacccga
atccgcctctgcaactctcccacgccccagttggatggcagggactgccagggagacgga
cgtcagactgaaatatgccagaagtcgccttgccctatcaatggaggttggggaccttgg
tcaccatgggacacctgcactgttacttgtggcggaggagttcagacccgcaaacgtctc
tgctctgaccccgtccccaaatatggtggaaaagactgtgttggtgatgccaccacgtct
caattgtgcaacaaacaggactgtcctattgatggttgtctgtccagcccatgcttctct
ggcacaaagtgcaccagcttccctgatggtactttcaggtgtggcaagtgtccacttggc
tatcgtggtaatggcgtcatctgcaaggacattgatgagtgtaaagaagtacctgatgct
tgccacactcataacggaatccatcgctgtgagaatactgaacctggttacaactgtatg
ccttgccccacacgtttctctggtcctcagccctttggaagaggagtggaacaggcaact
gctaaaaaacaggtttgtacgcctcgtaacccttgccaggatggtacccatgactgcaat
aaaaatgcaaaatgcatctacttgggcgtcttctccgactccatgttccgctgcgagtgc
aggccaggatacgccgggaatggcctgatctgtggcgaggacactgacctggatggatgg
cccaacactaacctgctgtgtgtggagaacgctacctaccactgcaagaaggataactgc
cccaaccttcccaactctggtcaggaagaccatgacaaagatggcctgggtgatgaatgt
gaccatgatgatgacaatgataggatccccgatgatagggacaattgcccaagagtgtac
aaccctgcccagtacgacgcagacagggatgatgttggcgacagttgtgacaactgtgtc
tacgaggccaacactgaccaaaccgacactgacaacaatggagagggtgatgcctgtgca
gttgacattgatggcgatggcattctgaatgagaacgacaactgcccctatgtttacaat
gtggaccagagagatactgatagagatggtgtgggagaccattgtgacaactgccctctg
gagcacaatcctgatcagttcgactcggactcagatctcattggagacaagtgcgacaac
aaccaggacattgacgaggacggtcaccagaacaacttggacaactgcccctacatccct
aatgccaaccaggcagaccatgacaaggatggcaagggtgatgcctgcgaccatgatgac
gacaatgacggcatccccgatgaaaaagacaactgtcgattggcctttaaccctgatcaa
ctggattctgatggtgatggccgtggtgatgtgtgcaaagacgattttgatcaagacaat
gttctggacatcaatgacgtgtgtccggagaactttgccatcagcgaaacagacttccgc
agattccagatggttcctctggaccccaagggtacctcccagattgaccccaactgggtg
gtccggcatcagggcaaggagttggtccagacagtcaactgtgatcctggcattgctgtt
ggttatgatgagttcagtgcggtggatttcagcggaacattcttcatcaacacggacaga
gatgatgattacgctgggtttgtgtttggctaccagtccagctcacgcttctacacggtc
atgtggaaacagatcacgcagacctactggtcccaaacacccacaaaagctcaaggctac
tctggcctgtcaatcaaagtggtcaactccaccactggccctggtgagcacctgaggaat
gccctgtggcacaccggggacaccccaggacaggttcgcactctgtggcacgaccccaag
aacatcggctggaaggacttcactgcctacagatggcacctgatccatagacccaagact
ggacttatcagagtggtcatgtatgaaggcaagagaatcatggctgatactggaaacatc
tttgacaagacatacgctggtgggcgactaggcttgtacgtcttctctcaggagatggtt
tacttctcagacctcaaatacgaatgcagagatacataa
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