Hippoglossus stenolepis (Pacific halibut): 118116317
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Entry
118116317 CDS
T08308
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3
KO
K03174
TNF receptor-associated factor 3
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04620
Toll-like receptor signaling pathway
hsp04621
NOD-like receptor signaling pathway
hsp04622
RIG-I-like receptor signaling pathway
hsp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
118116317 (traf3)
04621 NOD-like receptor signaling pathway
118116317 (traf3)
04622 RIG-I-like receptor signaling pathway
118116317 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118116317 (traf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
ATG16
zf-TRAF_2
zf-RING_UBOX
Crescentin
Sina_ZnF
zf-C3HC4_4
Fzo_mitofusin
Fez1
MctB
DUF4201
zf-RING_6
FlaC_arch
5_nucleotid
Motif
Other DBs
NCBI-GeneID:
118116317
NCBI-ProteinID:
XP_047197743
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All DBs
Position
10:complement(120762..132108)
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AA seq
594 aa
AA seq
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MSAGRSADGREVQIPLQQVAPSVAASLAVVSPITPPSHRPANPWPPSDPAASHGVAAGFL
PLHEGFRDHFVETPEAKYCCEVCRLVLCQPRQTECGHRFCQSCINHIFSQSNPVCPADME
QLFKDKIFRDVCCQREIMALKVYCRSEANGCQELMSLHQIPDHLNVCPFFEVPCPLGKCK
ERMMRKEIPDHLSWKCKHRETTCEFCITKMPLTDLQKHKETVCPAFPVSCPNHCSSSSLP
RSELSSHQHDCPKAQVICQFHRYGCTFKGLNQEMRQHESTCAAEHLRMMANRNSSLENKV
EEVKGELLERYKVLPALSSRLSDLENQNDELRDKNRQMEQKFSTMQKLMSSHSEKLLEVE
LELRSLRLLRDEVENLRGTLESVRVRLTALEQGRSGTGPSTHTLAPLETQLNRHDDMLSV
HEIRLADMDLRFQVLETASYNGTLIWKIRDYKRRKQEAVAAKTLSLYSQPFYTGYFGYKM
CARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPSRKHLGDAFKP
DPNSSSFRRPAAEMNIASGCPLFVSQSVLETGSYIKDDTIFIKVTVDTSDLPDP
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcagggaggagtgctgacgggagggaggtgcagattcccctccagcaggtggcg
ccctctgtggctgcctccctcgctgtggtctctcccatcaccccaccctctcaccgccca
gccaatccctggccccccagcgaccctgctgcttctcacggtgtcgctgcaggtttcttg
cctcttcatgaaggattcagagatcactttgtagaaactccagaagccaaatactgctgc
gaggtgtgcaggctggtcctatgtcagcctcgccagaccgagtgtggacaccgcttctgt
cagagctgcatcaaccacatcttcagtcagtcaaacccggtgtgtccagctgacatggag
cagctgtttaaagacaagatcttcagagacgtttgctgccagcgggaaatcatggctctg
aaggtttactgtcgcagtgaagccaatggctgtcaggaactgatgagtctgcaccagata
cctgaccacctaaatgtgtgtccattctttgaggttccctgtccattgggtaaatgcaaa
gagcgaatgatgaggaaagagattcccgaccacctgagctggaaatgtaaacacagagag
accacctgcgagttctgcatcaccaagatgcctctgactgacctgcagaaacacaaagag
acggtgtgtccagcattcccagtgtcctgtccaaaccactgctcctcttcctccctgccc
cggagtgagctgtccagtcaccaacatgactgtcctaaagctcaagtgatttgccagttt
caccgttacggctgcaccttcaaggggttgaaccaggaaatgaggcaacatgagtcgacc
tgtgcagctgagcacctgaggatgatggccaataggaactcctcattagagaacaaggtg
gaggaggtcaaaggtgagctgttggagcgctataaggttcttccggctctcagcagtcgt
ctgtcagacctggagaaccagaacgacgagctgagagacaagaaccgacaaatggagcag
aagttctccaccatgcagaaactcatgagttctcactcagagaagctgctagaggtggag
ctggagcttcgttctctgcgtctcctcagagacgaggtcgagaacctgagaggaactctg
gagagcgttcgggtgaggctgactgctctggaacaaggacgcagcggaaccggaccctct
acacacactctggcacccctggagactcagcttaatcgacacgacgacatgctaagtgtc
cacgagatccgattggctgacatggacctgcgtttccaggtgttggagacggcgagctac
aacgggactctgatctggaagattcgcgactacaagagacggaaacaggaagctgtggcg
gcaaagacactgtcgctgtattcacagccattttatacaggatactttggatataagatg
tgtgcccgagtctacctgaatggagacggcatgggcaaagggacacacctttcgctgttc
tttgtggtaatgaggggcgagtacgacgccctgctgccctggcccttcaaacagaaagtg
actctgatgctgatggaccagggtccgtccaggaaacacctgggcgacgccttcaaaccg
gatccaaacagcagcagcttccgacgccctgctgcagagatgaacatcgcctccgggtgt
cctctgtttgtgtctcagagtgtcctggagacaggcagctacattaaagacgataccatc
ttcatcaaggttaccgtggatacctctgacctacctgacccttga
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