Hippoglossus stenolepis (Pacific halibut): 118116668
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Entry
118116668 CDS
T08308
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 homolog
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118116668 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118116668 (c9orf72)
Membrane trafficking [BR:
hsp04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
118116668 (c9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
DUF7645
Motif
Other DBs
NCBI-GeneID:
118116668
NCBI-ProteinID:
XP_035024381
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All DBs
Position
10:22067909..22083369
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AA seq
462 aa
AA seq
DB search
MSSGCPPQSPAVAKSEVAVEGECPLLAATFAYWDNILGPRVRHIWSPKGDQLMFLSDGEV
TFLANHTLNGEILRSAECGAVDVKFFVLAEKGVIIVSLIFDGELKGDKNTCALSIILPQT
ELAFYLPLHTICVERLKHAIRKGRIWMQKGYNIISVLSLEIVPIMELLASMKSHSVPEDI
DIKDTVLNDDDIGDSCHEDFLHKAISSHLQTCGCSIVVGSNPEKVNKIVRTLCVFLTPAE
RKCSRLCKADSSFKYDTGLFVQGLLKDSTGSFVLPFRQVLYSPYPTTHIDVDINTVKQMP
PCHEHMYNQRRYMRSELSTLWKTDSEEDIPPDTVIHTDESFTPDLNIFQDVMHNDTLVKS
FIDEVFMLKPGLSLRSTYLAQFLLLLHRKALTLLKYIEDETQKGKKPFRSLRNLKTDLDL
TVEGDLSIIMAFAEKLRAGLHSFVFGKPFYTSMQERDVLMTL
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccggctgtccaccccagtcacctgctgtggcaaagtctgaagtcgcagtagag
ggagaatgtccactgctggctgccacctttgcctactgggacaacatcctgggtccacgc
gtgcgacacatctggtcaccgaagggcgaccaactgatgttcctcagtgatggagaggtc
acctttctggccaatcacactctcaatggggagattctccgcagtgcggagtgtggcgcc
gtggatgtgaagttcttcgtcctggcagaaaagggcgtcatcattgtgtccctcatcttc
gacggtgaactgaagggggacaagaacacgtgtgccttgtccatcatcctgccgcagaca
gagctggccttctacctgcctctgcacaccatctgcgtggagaggctaaaacacgccatc
cgcaagggccgcatttggatgcagaagggctacaacatcatctcagtgttgagcttggag
attgtccctatcatggagttgttggcctctatgaagtcacacagcgtgccagaggatata
gatataaaagacacggtgctaaatgatgatgacatcggggacagctgccacgaggatttc
ctccacaaggccatcagctctcatctgcagacatgcggctgttcaatcgtagttggaagc
aacccagagaaagtaaataagattgtgcgaacgctctgtgtcttcctcaccccggccgag
aggaagtgctctcgtctctgcaaggcggattcttcctttaaatatgacacaggcctgttt
gtacagggtctgctcaaggactccacgggcagctttgtcctgcccttccgccaggtgctc
tactcaccgtacccaaccactcacatcgacgtcgacatcaacactgtaaagcagatgcca
ccgtgccacgagcacatgtacaaccagcggcgctacatgcggtcagagctgagcacgctc
tggaagacggacagcgaggaggacatacccccagacacagtcattcacactgatgaatcc
ttcacacctgacctgaatatatttcaggacgtaatgcataatgacactttggtgaagtca
tttatcgacgaggtgttcatgctgaagccgggcctgtccctgcggagcacctatctggcc
cagttcctgctgctgctccacaggaaagccctcacactgctcaagtacatcgaggacgaa
acgcaaaaggggaagaagccgtttagatccttgcgcaatttaaagacggacctggatctg
acagtggagggagacctgagcatcataatggccttcgctgagaagctgagagcggggctg
cactcgtttgtgtttgggaagccattctacaccagcatgcaggagcgagatgtactcatg
accttgtga
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