Hippoglossus stenolepis (Pacific halibut): 118122075
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Entry
118122075 CDS
T08308
Symbol
rb1
Name
(RefSeq) retinoblastoma-associated protein isoform X1
KO
K06618
retinoblastoma-associated protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04110
Cell cycle
hsp04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
118122075 (rb1)
04218 Cellular senescence
118122075 (rb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118122075 (rb1)
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118122075 (rb1)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118122075 (rb1)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
118122075 (rb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rb_C
RB_A
RB_B
DUF3452
HTH_CHD6-9
Motif
Other DBs
NCBI-GeneID:
118122075
NCBI-ProteinID:
XP_035034414
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All DBs
Position
15:9869293..9889186
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AA seq
919 aa
AA seq
DB search
MPPKKRGSGTPQSKGQKPGAESVSPDKKESPELSVKKHRDKDAEFVTLCKSLHVTDLVCD
GAWTLWKTVQESMEEVTDSQKRLWGACLFVTVTDMDASCFTLTQVLKAVCLNVKQFMDLV
RKLDVNLDTITTKVNSAMTRLEKKYDMTLALYQRFEKTCKKIFALVSDGTERETMRSCWT
MFLLAKGRVLQMEDDLVISFQLLLCMLELFIKRCPSDLLQPLYKSAISKVQSPPTRTSRR
NQSKVKSRPPEPEMDVQLLETLCNENECNAEEVKNVYQTSFAAFLDSLVSRSPDFPQVND
LDQQYEEHYLKTRDIDGRLFFDRDETVLVPKVEVSEVEMTPKKNLADEDAVLIPPQTPIR
AAMTSIQQLRSDLLSTGDQPSTNLYSYFENCTVDPTQDVLKRLETFDQEFSQSFGQAVGP
RCIVLGKQRFTLGVRLYYIVMEAMLKSEEKRLSVQNFSKLLNDSTFHTSLLACALEVVMA
AYGESCFKAGGYNHGGGDSAATDVCFPWILDVFNLAAFDFYKVIESFIKAYPTLSKDIVK
HLETCENLIMERIAWRTGSPLFELLKQEHDSGAAEQVETPASFNQPLQHNHTAADLYLSP
VRPGHRVLPPESPGTVNSQASSHAPNQLHTQIPRQPKSNSLSLFYKKLYRLAYTRLKILC
SYLLSSHPELEPIMWTLFQHTLQHEYELMKDRHLDQLMMSAMYAICKVKSVDLRFKTIVT
AYKNLPNTNQETFKHVLITEGHYDSIIIFYNQVFMQRLKTNILQYASTRPPTLSPIPQIP
RSPYKILNSPLRVPGSNNVYISPLKSPRMSPGMMTPRSRMLVSIGESFGLSSRFQKINQM
VNSSDRSFKRTLDLGSAPKPLKRLRFDVDGQDEADGSKSGGDSTLIQKLAEMRDFIYLGS
ARSRMQEQKLKEDAEARKE
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgccacccaagaagcgcggctccgggacaccgcagagcaaagggcagaagcccggggct
gaaagtgtctccccggacaagaaggagagtccagagttatctgttaaaaaacaccgagac
aaggatgcagagtttgtgaccctgtgcaagagcctgcacgtcacagacctggtgtgtgat
ggagcctggaccctgtggaaaactgtgcaagagtccatggaggaagtcactgacagtcag
aaaaggctgtggggtgcttgtctgtttgtgactgtgacagacatggatgcctcctgtttc
accctaactcaggttctcaaagcagtttgtctgaatgtgaaacagttcatggatctggta
aggaagttggatgtgaacttggataccattaccaccaaggtgaattcagcaatgacgcga
ctggagaagaagtatgacatgactctggctctttaccagaggtttgagaagacttgcaag
aagatctttgctttggtttctgatggaacggagagggagaccatgcggagctgctggaca
atgtttctcttggccaaaggaagggtcctacagatggaggatgacctggtcatatcattc
cagctgctgctctgtatgctggagttattcatcaagcgctgcccttcagaccttctgcag
cctctttacaaatcagccatcagtaaagtccagagccccccaacacgaacatctcgtcgt
aaccagagcaaggtcaaatcccgacctcctgagccagagatggatgtgcagcttcttgaa
accttgtgcaatgagaatgaatgcaatgcagaggaggtgaagaatgtttaccagaccagt
ttcgccgctttcttggactcactagtttcaagatctccagattttcctcaggtgaatgac
ctcgatcaacaatatgaagaacactacctcaagactagagacatcgatggacggctgttt
tttgacagagacgagactgttcttgtgcctaaagttgaagtatcagaggtggagatgacg
ccaaagaagaacctggcagatgaagatgctgtactcatccctccacagacgccaatcaga
gctgccatgacctccattcaacagttgaggagtgatctcctctctactggggaccagcca
tctactaacctgtattcatatttcgaaaattgcactgtggacccgacacaagacgtgctg
aagcgtttggagaccttcgatcaggagtttagccaaagttttggtcaggcagtcggcccg
cgctgtatcgtacttggaaagcagcgatttaccctcggagtacgactgtattatatagtc
atggaggcaatgttgaaatcggaagagaagcgactgtctgtgcaaaatttcagtaaactc
ctcaatgactccacattccacacatcacttttggcctgtgctctggaggtggtcatggca
gcatatggagagagctgttttaaggctggaggatacaaccatggcggtggtgactcagct
gcgacagacgtttgtttcccctggatactggacgtgttcaacctcgccgcctttgacttc
tacaaagtcatcgagagtttcatcaaggcctaccccacactgagcaaagatattgtcaaa
catctggagacttgcgagaacctcatcatggagaggatcgcatggaggacgggctccccg
ctatttgagctgctgaagcaggagcatgacagcggagcagcagagcaggtggagacccca
gccagtttcaaccaaccactgcagcacaatcacaccgcggctgacctatatctgtcccct
gtgcgtccgggccatcgtgtcttgcctcctgagtctccaggcaccgtcaactctcaggct
tcctctcacgctccaaaccagctgcatactcagattccacgacagcccaagtccaactct
ctcagcctcttctataaaaaattgtaccgtcttgcctacacgaggctgaagatactctgc
tcctacctgctctcctcccaccctgaactggagcccatcatgtggacacttttccagcac
acactgcagcatgagtacgagctgatgaaagaccgtcacctcgaccagttgatgatgtca
gccatgtatgccatatgtaaagtgaagagtgttgatctgcgcttcaagaccattgtcacg
gcttacaagaacctgcccaacaccaaccaggagacctttaagcacgtgttgatcactgag
ggccactacgactccatcataatcttctacaatcaagtgttcatgcagaggttgaaaacc
aacatcctgcagtatgcgtccaccaggccgcctaccctctctccaatcccacaaatacca
cgcagtccctacaaaatcctgaattcccctctgcgtgtgcctggcagcaacaacgtgtac
atctcccctctgaaaagcccacgcatgtccccgggtatgatgacgcctcgctccagaatg
ctggtatcaatcggcgaatcttttgggctgtccagtcggttccagaagatcaaccagatg
gtcaacagcagtgatcgctcctttaagaggactctggatctcggctcggctccaaagcct
ctgaagcggctacggttcgatgtcgacggacaagatgaagctgacggcagcaaatctggt
ggagattctacactgatacagaagcttgcagagatgagggattttatttatttaggctcc
gcccgaagtcgtatgcaggagcagaagctgaaggaggacgcagaagcaaggaaggagtaa
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