Hippoglossus stenolepis (Pacific halibut): 118122175
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Entry
118122175 CDS
T08308
Symbol
trpc6a
Name
(RefSeq) short transient receptor potential channel 6a
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118122175 (trpc6a)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
118122175 (trpc6a)
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
YVC1_C
DUF6744
DUF2516
Motif
Other DBs
NCBI-GeneID:
118122175
NCBI-ProteinID:
XP_035034616
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Position
15:complement(12433822..12443580)
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AA seq
881 aa
AA seq
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MNHKPLETYYKPVGYTNSPRARSRDNLLTYDDLGEENCCTAGRSFGYSSSEMQLMARLSA
VKRRQALRGPSYMFSAPSVSLSEVEQRFLEAAEYGNIPEVRRMLLHMPNLNVNAVDYMGQ
NALQLAVSNEHLEVTELLLGRADLARVGDALLLAISKGYIRITETLLSHPAFRDSHRQTA
SPAQADMLDDFYAYDEDGTRFSHDVTPVILAAHCQEYEIVHTLLSKGARINPPHDYFCSC
DSCNYQQQFDSFSHSRSRINAYRGLASPAYLSLSNEDPVLAALELSNELAMLANIEKEFK
NDYCRLSSQCKDYVVGLLDLCRSTEEVEAILSGEEDSEDSYDLPGRPSLTRLKLAIKYEL
KKFVAHPNCQQQLLGIWFENLPGLRQQTTAIKLLVVLAVAIGLPGLAVAYWIAPCSRVGK
VMRSPFMRFVAHASSFTIFLGLLILNAADRFAGTTHLPNMTHHQHPGGAHLTSDPLLLYR
MTTTPFTCMEILIISWVIGMIWAEVKEIWSQGLGEYLVEPWNFLDFGMLAIFLASFCCRF
SALRHADLAQTYVHTHYTTLINVTLPPEIHYFTLARLYWLPSDPQLVSEGLYAVAVVLSF
SRIAYILPANESFGPLQISLGRTVKDIFKFMVIFLLVFLAFMIGMFNLYSYYLGAKQNDA
FTTLEESFKTLFWAIFGLSEVKSVVINNGHKFIENIGYVLYGVYNVTMVIVLLNMLIAMI
NSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSMLGMGTGIKTLLLHY
VARHREDKTETQLNQLGVDKTSGYGTSTSPSRYQKIMKRLIKRYIIKAQADRESDEITEG
ELKEIKQDISSLRYELLEEKSQSKDTLDGLLKRMGEISSSS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacaaaccactggagacttattataagcctgtaggttacactaacagcccgagg
gccaggagccgtgataacctgttgacctacgatgatttgggagaggaaaactgctgcact
gcaggacgaagctttggctacagcagctcggagatgcagctcatggctcgcctcagcgcc
gttaaacgacgccaggcccttcgtggtccttcatacatgttctctgcaccttcagtcagc
ctgtctgaggttgagcagcgtttcctggaggcagccgaatacggcaacataccagaggtg
cgacgcatgttgctccacatgcccaacttgaatgtcaatgctgtggactacatgggccag
aatgcattgcagctggctgtgtccaatgagcatctggaggtgacagagctgctgctgggg
agggcggatttggccagagtgggtgacgcccttctgttagccatcagtaaaggttatatt
cgtatcacagagaccctgttgagtcaccctgcatttagagattcccatcgtcaaacagcg
agccctgctcaagctgacatgttggatgacttctacgcttatgatgaggacgggacgagg
ttttcccatgatgtgactccagtgatacttgcagcacactgccaggaatacgagatagtt
cacaccctgctgagtaaaggcgctcgcatcaatcccccccatgactacttctgcagctgc
gactcctgtaactaccagcagcagtttgactccttcagccactcgcgatcaaggatcaat
gcctacagaggcctcgccagtcctgcttacctctccttgtccaacgaggacccggtgctg
gccgccctggagctcagcaatgaactggccatgctggccaatattgagaaagaatttaag
aacgactactgccgcctgtcgagccagtgtaaggactatgtggtgggcctcctggatctg
tgccgcagcacagaggaggtggaggccatactgagcggagaagaagactctgaagacagc
tatgatctcccaggtcgcccctcacttacaaggctcaaattagccatcaaatatgaactt
aaaaagtttgtggctcatcctaactgccagcagcagctgctcggtatctggtttgagaat
ctacccggactgagacaacagaccactgctatcaaactgctggtggtgctggcggtggct
attggacttcctggactggcggtggcttactggattgctccgtgcagcagagtggggaaa
gtaatgcgcagccccttcatgaggtttgtggcccatgcctcgtccttcacaattttcctg
ggtcttctcatcctgaatgctgccgaccgtttcgcaggcaccacccatttaccaaacatg
acccaccatcagcacccaggaggagcacacctcacctcggacccactgctgctctaccgc
atgaccacgacgcccttcacatgtatggagatcctcatcatttcatgggtcatcggtatg
atctgggctgaggtgaaggagatctggagtcagggactgggggagtatctggtcgagccg
tggaacttcctggactttgggatgctggcaatcttcctcgcctccttttgctgccgcttc
tctgctctgagacacgctgacttagcacagacctatgtacacacacactacacaacactg
attaatgtcacactgccccccgagatacactacttcacactggcacgtctctactggttg
ccgtcagatccccagctggtgtcagagggcctgtatgcagttgcagtggtgctgagcttc
tctcggattgcttacatcctcccagccaacgagagcttcggtccactgcagatctcttta
gggaggaccgtcaaggacatcttcaagttcatggtcatcttcctcctggtcttcctggcg
ttcatgatcggcatgttcaacctgtactcctactacctgggggcaaagcagaacgacgcc
ttcaccaccctggaggagagcttcaagacattattctgggctatatttggactgtctgag
gtcaagtccgtcgtgatcaacaacggacacaaattcatcgagaacatcggctacgtgctg
tacggggtctacaacgttaccatggtgatagtgttgctcaacatgctcatcgccatgatt
aacagttccttccaggagattgaggatgatgctgatgtcgaatggaagttcgctcgggcc
aaactctggttctcgtactttgaggaggggaggacgctccctgtgccctttaacctggtg
cccagtcccaagtccatgctgggaatgggcacaggtatcaagaccctgctgctgcactat
gtggcaagacacagagaggacaaaacggagacacagcttaatcagctcggagtggacaaa
acttcaggatatggaacttcaaccagcccgtccaggtatcagaagatcatgaagcgactg
ataaaacgttacatcatcaaagcccaagctgacagagagagcgacgagatcactgaaggt
gagctgaaagagatcaagcaggacatctccagcctgcgatacgagctgctcgaggagaaa
tcccagagcaaggacacgctggacggactgctgaagagaatgggagagatcagttcgtct
tcatag
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