Hippoglossus stenolepis (Pacific halibut): 118122333
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Entry
118122333 CDS
T08308
Symbol
smcr8b
Name
(RefSeq) guanine nucleotide exchange protein smcr8b isoform X1
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118122333 (smcr8b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118122333 (smcr8b)
Membrane trafficking [BR:
hsp04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
118122333 (smcr8b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
Motif
Other DBs
NCBI-GeneID:
118122333
NCBI-ProteinID:
XP_035034896
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All DBs
Position
2:complement(24540046..24548473)
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AA seq
915 aa
AA seq
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MIGSPDLLAFTGLEGFGEGDEDQGYAWPPEELSVPLLPPSHPWSCAALFHRDFILVAEFS
EQVGPKPVLTIPDDPRVIGSFDLNHFSVRIMSVDYQASGPVHASHASPGPRLNFSEDSEV
ILGDSAEDAFAYVHHLTLYDLEARGMVRPFCMAYVCSDLAKLMENFAELSACFARASDSL
KTGNRQAFSMELQRKLQELEYKRLTLLQQTKHLSTVNGFTEDAGQAADLESVERSILNHR
DLLRQVTSYPNRKLKQPDFLPYDPADSLTDPTALLPTEQSPPTPSPCRSEHSLKPLQELC
NDYFLSLTKEQLGDTERRLRGDRSVLRTVRVSRSLSRKLALTNFLFEYWSTENEEEEEKE
VAELPRASQSGVRRTSSELMSLESFYSCVEEIPIKLEAGGTLTSDPSVVMEMAGSVSSSD
SIEVLGTEKSYRTQHDVDGSDSREAADSFLSSAETPVMLMDPPFRRVPVDTGARRGRAYA
RRANSEDSIEVLSTTESIFPDDLTAITEEEAEQQPLSNGFDDEEEETLTERRPEEKILNV
TGGGHEHGNSQFAQREEGDEDEPLKEITVGDGVEIKEEPVECWKKNQEREDESPEKTSNI
LQVHEAVEPMPNSSKVHQMFQWMDLHVNLAPPVAPAEADHWSPPRAPLRLPSIDEASDCA
SFTGSSDPPSPTQNIHINTRSDKRRRKAGLRALRFVKHNSFSHHAVFCLLSGRPLVVIGG
DESLVRKLVDALSLFLPAPDRNAVTPCLTTPLQLTDLLTWRLIGIHRSPSSSSSSIIHSL
SRYSRYLALLDLDQRTLRCPSYSGSLISRMADPHSGISRGVTYLLHLESCLTALVNQALL
YTFRPASRRPNAAGGPDSTGGKEDLYTPRLCSSEQDVRVMNFLSELIKQRHAGRGPPVLR
FSYSAVQLHRNTYTT
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggtcaccggacctcctcgcgttcaccggcctcgagggcttcggggaaggggac
gaggaccaggggtatgcgtggccgccggaggagctctccgtcccgctgctgcctccctca
cacccctggagctgcgccgcgctcttccacagggacttcatcctggtggcggagttctca
gagcaggtgggtccaaagcccgtgctgacgataccagacgaccccagagtcatcggctcc
tttgacctcaaccacttctccgtccgcatcatgtccgtggactaccaggcgtccggcccc
gtccacgcctcccacgcctcccccggcccccgcctcaacttcagcgaggactccgaggtg
atcctgggagactcggccgaggacgcctttgcgtatgttcaccacctgaccctgtacgac
ctggaggctcggggcatggtgcgtcccttctgcatggcctacgtgtgctcggacctggcc
aagctgatggagaacttcgccgagctgtccgcgtgcttcgctcgggcgtctgacagcctc
aagacggggaacaggcaggccttctccatggagctgcagagaaaactgcaagagctcgag
tacaagaggctgacgctgcttcagcagacaaaacatctgtcgactgtaaacggcttcaca
gaagacgcaggacaagccgctgatcttgaatctgtggagcgttccatcttaaaccacaga
gacctcctccgccaggtcacatcctacccaaacaggaagctcaaacaaccggacttcctg
ccctacgaccccgccgactccctcactgatcccactgctctgctgcccactgagcagagc
ccccccacgcccagcccctgcaggtcggagcacagcctgaagcccctgcaggagctctgc
aacgactacttcctctccttgacaaaggagcagctgggggacacagagcgccgcctccga
ggcgacaggagcgtcctgcgaactgtacgggtctcgcgttccttgtccaggaagctcgcg
ctcaccaacttcctgtttgaatactggagcaccgagaacgaagaggaggaggagaaggag
gtcgctgagctgccgagggcgagtcagagcggggtcaggcggaccagctctgaactcatg
agcctggagtctttctactcctgcgtggaggagatccccatcaagctggaggccggaggg
acgctgacctctgaccccagcgttgtcatggagatggcaggaagcgtgagcagcagcgac
agcattgaagtgctcggcacagagaaatcgtatcggacgcagcatgacgtcgatggatcc
gacagcagagaagcagctgacagtttcctctcctcagcagaaaccccggtcatgctgatg
gacccccccttcagacgagtcccggtcgacaccggtgccagacgcgggcgggcgtacgcc
agacgagccaacagcgaggacagcatcgaggtcctgagcaccaccgagtccatcttcccc
gacgacctcaccgccatcacagaggaggaggcggagcagcagcctctgagcaacggcttc
gacgacgaggaggaggagacgctgacagagcgcagacctgaggagaagatcctgaatgtg
accggtggaggacatgaacatggaaacagtcagtttgctcagagagaggaaggtgatgaa
gacgagcctctaaaggaaataactgtcggtgatggcgtcgagatcaaagaggagccagtc
gagtgctggaagaagaatcaagagcgtgaagacgagagtcctgagaaaacgtccaacatt
ctgcaagtccatgaagcagtggagccgatgcccaactcgtccaaagtccatcagatgttc
cagtggatggacctccatgtgaacttggccccccccgtggccccggcggaggctgaccat
tggtccccgccccgcgctcctctcaggctgccgagcatcgacgaagcgtcggactgcgcc
agcttcacaggctcctcagaccctccctcccccactcagaacatccacatcaacacccgc
tcagacaagaggaggaggaaggccggtctccgagccctgaggttcgtcaagcacaactcc
ttctcccatcacgccgtgttctgcctcttgagcggccggccgctggtggtcatcggagga
gacgagagcctggtgaggaagctggtggacgctctgagtctcttcctgccggcgcctgac
agaaacgccgtgacgccgtgtctgaccacgccccttcaactgactgacctgctcacctgg
agactgatcggaatacacagatccccctccagctcctcgtccagcatcattcactccctg
agccgctacagtcgttatctggctctgctggacctggaccagaggacgctgcgctgtccg
tcctactccggctccctcatcagcagaatggccgatcctcacagtggcatcagccgcggc
gtcacctacctgctgcacctggagagctgcctgaccgcgctggtcaaccaggctctgctg
tacacgttccgtcctgcttcacgccgtccgaacgccgcgggagggccggacagtaccggc
ggaaaagaggatctctacactccaagactgtgcagcagtgaacaggatgtgagagtgatg
aacttcctgtccgagctcatcaaacagcgccacgcaggacgcggacccccggttttgaga
ttctcctacagcgcggtgcagcttcacagaaacacgtacacaacatga
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