Hippoglossus stenolepis (Pacific halibut): 118122346
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Entry
118122346 CDS
T08308
Symbol
tiam1a
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04530
Tight junction
hsp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118122346 (tiam1a)
09142 Cell motility
04810 Regulation of actin cytoskeleton
118122346 (tiam1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
118122346 (tiam1a)
Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
118122346 (tiam1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
PDZ_6
PDZ_2
RNA_pol_Rpc82
Motif
Other DBs
NCBI-GeneID:
118122346
NCBI-ProteinID:
XP_035034909
LinkDB
All DBs
Position
15:19803037..19875784
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AA seq
1656 aa
AA seq
DB search
MGNAESQNGDSGFCGDATGPLSRKHTSRSLRLSSKQPITRRSRISSSVKQEHRNSEASTR
SSSTPSIPQSLAENGLEPFNATDEFGEFGINPHWTQRVAMTMRPESYQQDDDPLATPTPE
TSEADTVAQDGGEDSMGEGEGDAAGEERYLQRMTEGPREGGSFKKKRSKSADMWREDSLE
FSMSDMSQEHLTSTEEIIDGGEEEEEEQFTRPNAGSAERASSLDHLCSQQSPGLRGQRSR
YPKNRREADCGGDGEEGLMSPTEEDLGGYGAFTLPCRRSHCLSEGLGGLGIPAAPCPAFQ
GRRAQTTQDISAILGEGSEYGDSGIDGVTTEIDGDGELVSRRCKAMSASFSVYSATESSV
FNGSDSGSSSAGGGEGRGGEGGRGGVYENFRKELDNQAWMPGRDCLEEAGSAVSDEQSSS
TLSSAYPSDALIGCAQGTVRKAGALAVKNFLVHKKNKKVEPATRRKWKHYWVSLKGCTLF
LYDSDGRSGIDLNSVPKHSLWVENSIVQAVPEHPKKNFVFCLSNSVGDAFLFQTSGQTEL
ENWITAIHSACAAALARQHHREDTVRLLRTEVRKLEQKIDMDEKMKKMGDMQLSTVTDGK
KRKTILEQIFLWEQNLERFHMDLFRCRCYLASLQGGEPPNPKRLLGFVSRPTKLAMGRLG
IFSVSSFHALVAARTECSIRRRNQPMPRTFSKRRSRFSSLWGLDTTSKRKSKGHPSINQV
FVEGVESTKKPLERMFEDSVSEKSKETEASVKSLPQQNVDSYIWVPDYLTPSWVCLPNDQ
PVLAIIQPGDTALEVLSTICKTHKIDRSSHYLRLKVWVDNKMLFYVPQLEDDVSDLVYKE
IEICPKTTKMISFDNAESFTIGYGFSVAVIDEDGTQQLHITEVKEGGLASAKGLQAGDEI
LLLNDKPASALQMEDMRAAFVNQALTLCVSSLPPLDPRVLCSVPPRRSDGEQDPTTDIFS
QSQEEILDEVSGLTVESPDMSLQEGPQPTLQSPGDNQEDKTGAGQKSTEQVTAFCRSLHD
MNPTECPMSCSSSSSSSSLSPSPVSALPPTAGTAAQRQLSHADKLRKVINELVETEKTYV
KDLSCLIECYLTPLQKESFLTQDELDVLFGNLGEMVEFQVEFLRTLEDGIRLVPHLDRLE
RVEQFKKVLFSLGGSFLYYADRFKIYSAFCASHTKVPKVLAKAKTDPDFKAFLAERNPRQ
QHSSTLESYLIKPIQRVLKYPLLLRELYSLTDPESEEHYHLDVAMKAMNKVASHINEMQK
LHEEYGAVFDQLINEQTANKKEVADLSMGDLLLHSSVVWINPPAALVKGKKDPDLAAFVF
KTAVVFVCKDSSKHRKKIGGSHRASVSDDRDPFRFRHMIATDSLQLRALANSEGTAVCEI
VHTRSESEGRPERTFQLCCNSPDSKKDFLKAVHSILREKQRRQLLKTESLPLNQQYVPFG
GKRLCALKGMRPAMNRAASTPSRTLARRKLVRNRFTIDTDLVFHGNNNNSNDSDPSSCSP
LFQQRPALLQSHRPQGEDTDRWVEEQFDLGPYEGQGEGIGMGPVKETDILSDDDEYCKSV
RAASAEPPDLEGKMKGLDLQGGEMRSHNLNGRIETRSEVMEEEEVERIKHGDDSFTSCSV
SLSRCATPTLKLTKNDHDTVWVRRDELANRCNSDIY
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacgcggagagtcagaatggggacagtggtttctgtggcgatgcgacgggacca
ctctcccgtaagcacacgtcccgctcactccgtctctccagcaagcagccgatcacccgc
cgctcccgaatctcctcttcagtgaagcaggagcacaggaactctgaagcttcaactcgc
tcctccagcactcccagcatcccacagtcgttagcggagaacggactggaacctttcaac
gccacagatgagttcggagagtttggcatcaaccctcactggacgcagcgcgttgccatg
acaatgaggccggagtcctatcagcaagatgacgacccgctggccacaccgactcctgaa
acctcagaggcggacaccgttgctcaggatgggggagaggactccatgggagagggggag
ggagacgctgccggagaggagaggtacctccagcggatgaccgagggccccagagaggga
ggcagttttaaaaagaagcgctcgaagtctgcggacatgtggagagaagacagcctggag
ttctctatgtctgacatgagccaggagcacctgaccagcactgaggagatcatagatgga
ggagaagaggaggaggaggagcagttcacacgccccaatgcaggctccgctgagagagca
tcgtctctggaccatctgtgcagccagcagagtcctggcctcagggggcagaggagccgc
taccctaaaaaccggagagaggctgattgtggcggagatggagaggaggggttgatgtct
ccgaccgaggaggatcttggcggctatggagcgttcacgcttccttgccgacggtcccac
tgcctgtctgagggcttgggaggcctcggcattccggcggcaccgtgccctgctttccag
ggacgccgtgcacaaactacccaggacatctctgctattttgggtgaaggaagcgagtat
ggcgacagtggcatcgatggcgtcaccacggagatagacggggacggagagctggtgtca
cggcgctgtaaagccatgtcggcctccttctcagtgtactcggctaccgagagcagcgtc
ttcaacggcagcgacagcggaagcagcagcgccggaggaggagagggaagaggtggcgaa
ggaggaaggggaggagtgtacgagaatttccggaaggagctggacaatcaagcctggatg
ccgggtcgggactgcctggaggaggctgggtcggctgtgagtgatgagcagagcagcagc
accctcagcagcgcgtatccatcggacgctctgattggctgtgcacaaggcacggtcagg
aaggcaggagctctggccgtgaagaacttcctggttcataagaaaaacaagaaggtggaa
cctgcaacgaggcgcaagtggaaacactactgggtttctctgaaaggctgcacccttttc
ctgtacgactcggacggccgctcgggtatcgaccttaacagcgttcccaaacactcgctg
tgggtggagaacagcatcgtacaggccgtaccggaacatccgaagaaaaatttcgtcttc
tgcctcagcaactcagtgggggatgcattcctcttccagacgtccggccagacggagctg
gagaactggatcacggcgatccattccgcgtgcgccgccgctctcgctcggcagcatcac
agggaggacacggtgcgactgctgcgcaccgaggtccgcaagctggagcagaagatcgac
atggacgagaagatgaagaagatgggagacatgcagctgtccaccgtcacagatggcaag
aagaggaagaccatactggagcagatcttcttgtgggagcagaacttggagcggtttcac
atggatctgttccgctgccgctgctacctggccagtctgcaaggcggcgagccccccaac
ccaaaacgcctgctgggcttcgtgtcacgtcccaccaagctggccatgggacgcctgggc
atcttctccgtatcttccttccatgcgctggtggcggctcgtacggagtgcagcatccgg
aggcgaaaccagccgatgccccgaaccttcagcaaacgtcgaagccggttctcctccctg
tgggggctggacaccacctccaagaggaagagcaagggtcatccctccatcaaccaggtt
ttcgtagagggggtggagtccacgaaaaaacccttggagcgaatgtttgaagactccgtc
agtgagaaatctaaggagacagaggcatcggtgaagagtcttccccagcagaacgtcgac
agctacatttgggttcccgattacctgactccctcctgggtgtgtctgccaaacgaccag
cctgtcctggccatcatacagcctggggacacggcgctggaagtcctcagcaccatctgc
aagacccacaagatagaccgatccagccactacctgcgtttgaaagtgtgggttgacaac
aaaatgctcttctatgttcctcagcttgaagacgacgtctcagatctggtctacaaagag
attgagatttgccccaaaacaaccaagatgataagttttgacaacgccgagtccttcacc
atcggatacggtttttctgtggctgttatagatgaagatgggacgcagcagctccacatt
acagaagtgaaagaaggaggactggcctcagccaaaggtttgcaagcaggggatgagatc
ctgttgctcaacgataaacctgcgtctgccctccagatggaggacatgagggctgcgttt
gtgaaccaagcgttgaccttgtgcgtcagcagcctgcccccgctggaccctcgggtgctg
tgctccgttccaccgcggcgctctgatggggagcaggacccgaccacggacatcttctcc
cagagccaggaggaaatcctggatgaggtatcaggtttgacagtggagagcccagatatg
agtttgcaggaaggacctcagccgaccctgcagagccccggagacaatcaggaagacaaa
acaggggccggacagaagagcacggagcaggtcaccgctttctgccgcagcctccatgac
atgaatcccacagagtgccccatgtcgtgctcctcctcatcctcctcctcgtccctttca
ccgagccccgtgtcagctttgccacccacggctggaaccgccgctcagagacagctctcc
cacgcagacaaactccgcaaggtcatcaatgaattggtggagacggagaagacttacgtc
aaagacctgagctgcctgatcgagtgctacttgacacctctgcagaaagagagcttcctc
acacaggatgagctggacgtcttgttcggtaacctcggggagatggtggagttccaggtg
gagtttctccggacactggaggatggaatcagactggtgcctcatcttgaccgactggaa
agggtggagcagtttaagaaagtgctgttctccttgggtggttcctttctgtattacgcc
gaccgcttcaagatctacagcgccttctgcgccagccacaccaaggtcccgaaggtcctg
gccaaagcaaagactgatccagatttcaaggctttcctggccgagagaaacccccgacag
caacattcctccaccctggagtcgtatctgatcaaacccatccagagggtcctgaagtac
ccgctgctgctcagggagctctactccctcaccgacccggagagtgaggaacactaccac
ctggacgttgcaatgaaggccatgaacaaggttgcgagtcacatcaacgagatgcagaag
cttcacgaggagtacggggccgttttcgatcagctcatcaatgaacagactgcaaacaaa
aaagaggtggccgacctctccatgggggatctgttactacattcctccgtggtgtggatc
aaccctccagccgctttggtcaaaggcaagaaggaccctgatctggctgctttcgtgttc
aagacagcagtcgtatttgtctgcaaagactcctccaagcacaggaagaaaatcggcgga
tctcaccgagcgtccgtgagtgacgacagggatcctttccgtttccgtcacatgatcgca
acggactctctgcaactccgtgccctcgcaaactctgaggggacggcggtgtgtgagata
gttcacacaagatctgaatctgaagggagaccagagaggaccttccagctgtgctgcaat
tctccagatagtaagaaggacttcctgaaagcggtgcactccatcctcagggaaaagcag
cggcggcagcttcttaagacggagtctctgccgctcaaccagcagtacgtcccgttcggg
ggcaaacgcctgtgtgccctcaaagggatgcggcccgccatgaacagagcagcttcaact
ccatctcgaacgctggcccgcaggaagctggtgaggaaccgcttcaccatcgacaccgac
ctggttttccatggcaacaataacaacagcaacgactctgacccttcctcctgctcgccg
ctgttccagcagcgtccagccctcctccagtcccacagacctcaaggcgaggacacggac
cgctgggtggaggagcagttcgacctgggtccctacgagggccagggagagggcatcggc
atggggccggtgaaggagacggacattttaagcgacgacgacgagtactgcaagtctgtg
cgagctgcgtcggcagaaccgcccgacctggaggggaagatgaaggggctggacctgcag
ggtggagagatgaggagtcacaacctgaacggacgaatagagacaagaagtgaggtgatg
gaggaggaggaagtcgagcgaataaagcacggtgatgattcgttcacctcctgcagcgtc
tccctgtcccgctgtgcgaccccaactctaaagcttacaaaaaacgaccacgataccgtc
tgggtgcggcgggacgaacttgcaaacaggtgcaacagtgacatctactga
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integrated database retrieval system
