Hippoglossus stenolepis (Pacific halibut): 118122934
Help
Entry
118122934 CDS
T08308
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118122934 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118122934 (eftud2)
Spliceosome [BR:
hsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118122934 (eftud2)
Complex C
U5 SnRNP specific factors
118122934 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
118122934
NCBI-ProteinID:
XP_035035795
LinkDB
All DBs
Position
16:15008835..15023075
Genome browser
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLDAEDRDVDEGDEDDDDEPADADDEVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRNRQFTLMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDMDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRLSDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIGELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSVCFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNAQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIKPLLRLVCN
RFFGEFTGFVDMCVHHIPSPQEGARNKIEHTYAGGLDSDLGESMAECDPEGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIHAGQPLKVLGENYTLEDEEDSQICTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEDAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKGIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagatctgtatgatgagtttggaaactacatcggtccagagctggactctgat
gatgatgaagacgatctggatgcagaggacagagatgttgatgagggcgatgaggatgat
gacgacgaacccgctgatgctgacgacgaagtcccgggcatggaggtggttctgcatgag
gacaagaagtactatcctacagcggaggaggtttatgggcccgaagtggaaactatcgtc
caggaggaagatacacaacctcttacagagcccatcatcaagcctgtgaggaacaggcag
ttcaccctgatggagcaagagttgcctgccacggtttatgatatggaattcctcgcagat
ctgatggatggtcctgagctaatccgtaatgtcaccctttgtggtcacctgcatcatggc
aagacgtgttttgtcgactgcctaattgaacagacacatccagaaatcaggaagagatat
gacatggatctccgctacactgacatcctctttacagaacaggagagaggagttggtatc
aagagtacccccgtcacaatggtcctgccagactccagaggcaaatcttacctctttaac
atcatggatacaccaggccacgtgaacttctctgacgaggtcacatcgagcatccggctc
tctgacggcgtggtcctcttcatagatgcagcagaaggagtgatgctgaacacagagcga
ctaatcaaacatgcggttcaggagcgcatggccatcaccatctgcatcaacaaggtggac
cggctcattggggagctcaaactgccgcccacagatgcttattataaactgcgccacatt
gtcgatgaagtcaatggtttgctcagcacgtactccaccgacgagaacctggtggtgtcg
cctctccttggaaatgtttgcttcgccagctctcagtacagcgtctgcttcaccctgggc
tcctttgcaaagatctactcagacacctacggtgacatcaactataatgagtttgccaag
aggctctggggcgacatttacttcaatcccaaaactcgcaaattcacaaagaaggctccc
agcagtaacgcccagcgcagctttgtggaattcgtgctggagcccctctacaagattctt
tcacaggtggttggggatgtagacacttctctccctcgagttctggatgagctggggatc
cacctgactaaagaggaactgaagctgaacatcaaacccctgctgaggctcgtctgcaac
cgcttctttggggaattcactggctttgtggacatgtgtgtgcatcacatcccctcgcca
caagagggcgcccggaacaagatagagcacacctacgcaggaggtctggactcagacctg
ggggagtcgatggcggagtgtgaccctgaaggtcctctgatgtgccacaccactaagatg
tacagcaccgaggacggggtccagtttcatgcgtttggcagggtgctgagcgggaccatt
catgcaggacagcccctcaaggttttaggagagaactacacccttgaggacgaggaggac
tcccagatctgcaccgtgggccgtctgtggatctctgttgctagataccagattgaagtg
aatcgagtacctgctggcaactgggtcctcatcgaaggttgtgatcagccaattgtcaaa
accgccacaatcacagagcccagaggcaacgaagacgctcagattttcagaccgttgaag
tttaacacagcgtcagttatcaagattgcggtggagcccgtcaacccatcagagcttccg
aaaatgttggacggactgaggaaggtcaacaagagctatccatctctcaccacgaaggtg
gaggagtctggagaacatgttatcttaggcacaggagaactctacctggattgtgtcatg
catgacctgcgcaagatgtactctgagattgacattaaggttgctgacccagtggtgacc
ttctgtgaaacagttgtggagacatcatctctcaagtgctttgctgaaacgccaaataaa
aagaataagatcaccatgattgctgagcccttggagaaagggctggccgaggacatagag
aacgaagtggtgcagatcacgtggaacaggaagaagctgggagagtttttccagacaaag
tacgactgggatctgctggctgccaggtctatctgggcctttggaccggacacgacgggg
ccaaacattcttgtagacgacacgctgccttctgaggtggacaaggcgctgctgggctcg
gtcaaagacagcatcgtccagggtttccagtggggcaccagggagggacctctgtgtgat
gagcccatcaggaacgtcaagttcaagatcctggatgcagtcatcgctcaggagcctctc
cacagaggaggaggccaggtcatcccaacagccaggagagtggtgtactctgctttcctc
atggccacaccgaggttgatggagccctattactttgtggaggttcaggctccggctgat
tgtgtctctgctgtctacacagtgctcgcgagaagaaggggtcacgtcactcaggacgca
cctattccagggtctcctctctacaccatcaaagctttcatcccggccatcgactccttt
ggctttgagacagaccttcgcacacacacacagggacaggccttcgctctctccgttttc
caccactggcagatcgtgcctggtgaccccttagacaagggtattgtgatcaggcctctt
gagccgcagcctgccccccacctggccagagagttcatgatcaagacccgaaggcgcaag
ggtctgagcgaagatgtgagtatcagcaagttctttgacgatcctatgttgttggagctg
gccaaacaggacgtggtgctgaactaccccatgtga
DBGET
integrated database retrieval system
