Hippoglossus stenolepis (Pacific halibut): 118123724
Help
Entry
118123724 CDS
T08308
Symbol
scn4ab
Name
(RefSeq) sodium channel protein type 4 subunit alpha B isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118123724 (scn4ab)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118123724 (scn4ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
118123724
NCBI-ProteinID:
XP_047199870
LinkDB
All DBs
Position
16:70213..98454
Genome browser
AA seq
1765 aa
AA seq
DB search
MAPMLPPLGVEVFRRFTPASLEEIQQRHEAEEKEDQRRKEKNIEVAEEDLPKPASDLEAG
KPLPFIYGDPPPGLLNSPLEELDPFYQSHKTFIVLSRGNIIYRFNAEPACFLLSPFSRLR
TFAIRILIHSLFSLFIMMTIMTNCVFMTMSDPPSWSKTVEYVFTFIYTFEATIKVLSRGF
CVGDFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKLADVMILTVFCLSVFALIGLQLFMGNLKQKCVLIPPLLRNNSSDVDPKTFYH
GNITLSNQTCGNDTGTSNFDFYEYINNPENHYFLPGNMDPLLCGNSSDAGVCPEGFMCLK
TGRNPNYGYTSYDSFGWAFLALFRLMTQDFWENLFKLTLRAAGKTYMIFFVVVIFLGSFY
LINLILAVVAMAYAEQNKATLSEAKHKEEDYAEILDALKKRDEEAACMAVLSESHNPNAT
QSHDQDHTVIEDPYHISDFEDDQRPCPVCWYAFADVFLKWNCCGCWRWLKQRLNTIVMDP
FVDLGITMCIVFNTVFMALEHYPMTEEFEELLSIGNLVFTGIFTAEMVFKLLAMDPYYYF
QVGWNIFDSIIVTMSLVELGLADVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVG
ALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCRIAEDCKLPRWHMNDFFHAFLIIFRVL
CGEWIETMWDCMEVSGQAMCLIVFMMVMVIGNLVVLNLFLAMLLSSFSGDNLAAPEDEGE
NNLQIAINRINRAVSWTRSGIVEHIWTLMGKKNHEQEHIGVDGEDDNKISKDILPLTFVT
SDQQLSEINSLSCSHDNVKSSYNNITFLRVPIAKAESESESETPENEDEEGEEEENHSEC
DESSFCSTVQTLPDIKEDEDDEDHESNTPEDCCTNKCYHRCPFLDIDPSKGRGRVWSNFR
RTCFSIVEHNYFETFIIFMILLSSGALAFEDIYLEQRRVIKMVLEYADQVFTYVFVIEML
LKWIAYGFKTYFTNAWCWLDFVIVDVSLVSLTANILGYSDLGAIKSLRTLRALRPLRALS
RFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFYYCFNATSAERFHPD
DVNNKTECLALINANFNDARWKNLKVNYDNVGMGYLSLLQVATFKGWMEIMYAAVDSRDV
ESQPMYEDNLYMYLYFVCFIIFGSFFTLNLFIGVIIDNFNQQKAKMGGTDLFMTEEQKKY
YNAMKKLGSKKPQKPVPRPKNKFQGLVFDLVTTQFFDILIMVLICLNMVTMMVETDEQSA
EKEMILYWVNLVFIIIFTTECSLKIIALRQHYFAVGWNIFDFVVVILSVVGLLLADIIEK
YFVSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIF
GMSNFAYVKKEAMIDDMFNFENFGNSMICLFMITTSAGWDGLLSPIMNTPPDCDPDLENP
GSMVRGNCGSPAVGIVFFTTYIIMSFLVVVNMYIAIILENFNVATEESSEPLCEDDFEMF
YETWEKFDPNASQFIQYSQLSDFCDILQDPLRIPKPNTVKLIHMDLPLVPGDKIHCLDVL
LALTAQVLGDSGAMDSLKANMEEKFMANNPSKVSYEPISSTLRRKHEEVAAMVIQRAYRK
HLLRRTVKVASYKYRKKTRGHQDEDLSLETKGLVFKRISQLYGDNQDSAESFAQVELQSE
FLLHAAPPVTAPNLLQDENLRESIV
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggcacctatgctgccccctcttggcgtggaggtctttagacgctttacacctgcttca
ctagaggaaatccaacagcgacatgaagctgaagagaaagaggatcagagaaggaaggaa
aagaacatcgaggtagcagaggaagatcttcctaaaccagcaagtgaccttgaggctggg
aagcccctaccattcatctatggagaccccccccctgggctcctcaacagcccattggag
gagctggatcccttctatcaatcacacaagacgttcatcgtgctcagtagaggaaacatc
atttacaggtttaatgctgaacccgcctgtttcctgcttagtccattcagtcgtttgaga
accttcgccatcaggatactcatccattctttattcagcttattcatcatgatgacgatt
atgacaaactgtgttttcatgacgatgagtgatccgccatcttggagcaagactgtggaa
tacgtgtttacgttcatctacacgtttgaagcaacaatcaaagttttgtcacggggattc
tgtgtcggagacttcaccttcctcagagacccctggaactggctggacttcatggtcatc
agcatggcatatctgacagagttcgtagatttgggaaacgtttctgcattgcgaacgttc
agggttcttcgagcactgaagaccatcacagtcatccctggtctgaagacgattgtcgga
gctctcatccaatcagtgaagaagcttgctgatgtcatgatcctgacggtgttctgcctc
agtgtcttcgctctgatcggtctgcagcttttcatgggaaacctgaaacagaagtgtgtc
ctgatacctccgttgcttaggaacaactcttctgatgttgatcctaaaaccttttaccat
ggcaacatcaccctcagcaaccaaacctgtggcaatgacacaggaaccagcaactttgat
ttctatgagtatatcaacaacccagaaaatcattacttccttcctggaaacatggatcct
ctgctctgtggaaacagttctgatgcaggggtctgtccagagggtttcatgtgtctgaaa
acgggtagaaatccaaactacggttacaccagctatgactcgtttggttgggcatttctg
gctctgttcagactcatgacccaggacttctgggaaaatctcttcaagctcacattgaga
gcagcaggtaaaacctacatgatcttctttgtggtcgtcatcttcctgggctcgttttac
ctcattaacctgatcctggcggtggttgcaatggcgtacgctgagcagaataaggccaca
ctttctgaggcaaaacataaagaggaggactacgctgagatcctggacgcgctgaagaag
agagacgaggaggcagcctgcatggcggtgctttcagaatcacacaacccaaatgcaacg
cagagtcatgatcaagaccacactgtcatagaagatccttatcatatttcagactttgag
gatgaccagaggccgtgtcccgtgtgttggtatgccttcgctgacgtcttcttgaagtgg
aactgctgcggctgctggaggtggctgaaacagcggctcaacaccatcgtcatggacccg
tttgttgacctcggcatcaccatgtgcatcgttttcaacactgtcttcatggccttggag
cattatccaatgacggaggagtttgaggagctgctgagcatcgggaacctggttttcaca
gggatcttcacagctgagatggtcttcaaacttctggccatggacccgtattactacttt
caggtgggctggaacatctttgacagcatcattgtcaccatgagtctggtggagctggga
ctggctgatgttcagggcctgtctgtgctgcgctcattccgattgatgcgagtctttaag
ttggccaagtcgtggccaaccctcaacatgctgatcaagatcatcgggaactctgtgggg
gctctggggaacctgactctggttctagcgatcattgtcttcatctttgccgtcgtcggt
atgcagctgtttgggaagaactacaaagattgtgtctgtcgcatcgcagaggactgtaaa
cttcctcgttggcacatgaacgactttttccacgccttcctcatcatctttagagtcctg
tgtggagagtggatcgagaccatgtgggactgcatggaggtctcaggtcaggccatgtgt
ctgattgtcttcatgatggtcatggtcatcggaaacctagtggtcctgaatctgtttctg
gccatgctgcttagctcgttcagtggagataatctggcagctccagaagatgaaggagaa
aacaatttgcagattgccataaatcggatcaacagggctgtgtcctggacaaggtctggt
atcgtggagcatatctggactctgatggggaagaagaaccatgaacaagaacacatcgga
gttgacggtgaagatgataacaagatctcaaaggacattttacctttgacctttgtgact
tcagaccaacaactgtcagagataaacagcctcagctgtagtcatgacaatgtgaaaagt
agctacaacaacatcaccttcctgagggtgcccattgccaaggcagagtccgaatcagaa
tctgaaacacctgaaaatgaagatgaggagggtgaagaggaagaaaaccattcagaatgt
gacgagtcatcattctgcagcacagtacagacacttcctgatatcaaagaggatgaagat
gatgaagatcatgagtcaaacacacctgaggactgttgtaccaacaagtgctatcataga
tgtccgttcctggacatagacccttccaagggcagagggagggtctggtctaacttcagg
agaacatgtttctccatcgtagaacacaactactttgagactttcatcatcttcatgatt
ctgctgagcagtggagcactggcattcgaggacatttacttggagcagcgtcgggtgata
aagatggttctggaatatgcagaccaggtgttcacctacgtgtttgtaatcgagatgctt
ctcaagtggatcgcatatggattcaagacctactttaccaacgcatggtgctggctggac
ttcgtaatcgtagatgtatctctggtatcactgacagcaaacatcctgggatactcagac
ctgggagccattaagtctctaaggactcttagagctctgaggcccttgagggccctgtcc
cgctttgaggggatgagggtggtggtgaatgctctggtcggagcgatcccgtcgatcttt
aatgttcttctcgtctgtttgatcttctggttgatcttcagcatcatgggagtaaatctg
tttgcaggaaagttttattactgtttcaacgcaacatcagcggagaggtttcatcctgat
gacgtcaataacaagactgagtgtctcgcactgatcaacgcaaacttcaatgacgctcgc
tggaagaacttaaaggtcaactacgacaatgtgggaatgggctacctgtcgctgctgcaa
gtggccacatttaaaggttggatggagatcatgtacgcagcagtggactccagagacgtg
gagtcacagccgatgtatgaggacaacctgtacatgtacctgtactttgtctgtttcatc
atctttggctccttcttcactctcaacctcttcattggagtcatcattgacaatttcaac
cagcagaaagcaaagatgggaggaacagatcttttcatgacggaagagcagaagaaatat
tataatgccatgaagaaactgggctccaagaaacctcagaaacctgtaccacgcccaaag
aacaagttccagggtttggtctttgaccttgtgacaacacagtttttcgacatcctcatc
atggtgctgatctgcctcaacatggtgaccatgatggtggagacggatgaacagagcgca
gagaaagagatgatcctgtattgggtcaacctcgtcttcatcatcatcttcacgacagag
tgctctctgaagatcatcgcgctcaggcagcactacttcgctgtgggctggaatatcttt
gactttgtggtcgtcatcctgtccgtcgtaggtctcctcctcgctgacatcatagagaag
tactttgtctcgccaacgctctttcgtgtcatccgattggctcgtatcggtcgaattctt
cgtctaattcgtggagcgaagggaatcaggaccctgctcttcgccctgatgatgtcactt
cctgccctcttcaacatcggcctcctcctcttcctcatcatgttcatcttctccatcttt
gggatgtcaaactttgcatacgtgaagaaggaggccatgatagatgacatgtttaacttt
gagaactttgggaacagtatgatctgtttgtttatgatcaccacgtcagctggatgggat
ggtctgctgagtcccatcatgaacacaccaccggactgcgacccagacctagagaaccca
ggatccatggtccgagggaactgcggcagcccagcggtgggtattgtcttcttcaccaca
tatatcatcatgtccttcctcgtggtggtcaacatgtatatcgcaatcatcctggagaac
ttcaacgtggccacagaggagagcagcgagccgctgtgtgaggacgacttcgagatgttt
tatgaaacctgggagaagtttgatcccaacgcgtcacagtttattcagtacagtcagcta
tcggacttctgcgacattctgcaggatcctctgaggattcccaaaccaaacaccgtcaaa
ctgatccacatggatcttcctctggttcctggagataagattcactgtctggatgtcctg
ctcgcactcactgcacaggtgttgggtgattcaggagcaatggattctctcaaagcaaac
atggaggagaaattcatggccaacaacccatccaaggtgtcatatgaaccaatcagcagc
accctgaggaggaagcatgaagaggtggcagcgatggtaatccagagagcgtacaggaaa
cacctcctgcggcggacagtcaaagtggcatcctacaaatatcgcaagaagacgaggggg
catcaagatgaggatttgtctctggagacaaaaggacttgtgtttaaacgtatcagtcag
ctgtacggagacaaccaggactctgctgagtcattcgctcaggtggagcttcagagtgag
tttctccttcatgctgctcctccagtcactgccccgaacctactgcaagatgagaacctg
agagagtcaatcgtgtga
DBGET
integrated database retrieval system
