KEGG   Hippoglossus stenolepis (Pacific halibut): 118125629
Entry
118125629         CDS       T08308                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X2
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    118125629
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsp03000]
    118125629
   04121 Ubiquitin system [BR:hsp04121]
    118125629
   03036 Chromosome and associated proteins [BR:hsp03036]
    118125629
Enzymes [BR:hsp01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     118125629
Transcription factors [BR:hsp03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    118125629
Ubiquitin system [BR:hsp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     118125629
Chromosome and associated proteins [BR:hsp03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    118125629
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     118125629
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box JmjC Cupin_8 LRR_4
Other DBs
NCBI-GeneID: 118125629
NCBI-ProteinID: XP_035040304
LinkDB
Position
18:complement(8850588..8871518)
AA seq 1390 aa
MADPAETCPESGRRLRSICRRMYDENEDPSDVEEITNIRGFSVEEKLVSDRYSANFVHLM
EGKDFTYEYVQREALRIPLIFKEKDGLGIRMPDPEFTVSEIKGLVGSRRSVDVMDVSTQK
GSEMTMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDQVDWVDNMWPPDL
KHSQTEATNVISEMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGQKVFWLVPPT
LHNLALFEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGG
NILHSFNIPMQLTIHEIENRTKVHSKFRFPFYYEICWYVLERYLHCLTKRSYLSLEVRKE
PVLMDDETKANTESPSSDSRSQDMNEDSCETQAREDQGEKAERAALDGPCSPDHGRGQHL
KAVLSIDSEDSCNPGSTSLDFPKTPSDSPASESQNKWTHLTEFELSGLRTLVEKLESLPE
NKKCVPEGIENPQALLDDIKLVLKEHADDDPKLAITGLPVVLWPKKTIKPRPPNRPKPKM
AASPASAVKLSASRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCI
MRQCIAPVLPHTAVCLVCGEAGKEDTVEDEEEKFNLMLMECSICNEIVHPNCLKVKDSNG
VVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKETRLIRDSKEEPDSPMVA
TATVTALTTTSAVKRKAEREDVPKRNDEEPPKKRPPLLSLDGTPRPRLEDNPLRKKRKLF
DTNDEPVIVKKKKKLLKPDDPLTQKLLRQIKTERDHGDEEYDQDDREGDGFCLDRIYSKE
KHEYGDEDQEEDELEEEKLKKEKDIRENKAKVMLNPLLRTSAVRESDHSSSNSPRAGPSS
ESGEAQEKSSTQLKARHQRRRLPNKELSKEFNQEVPQTEDRLSNQNHGSVKSEDSPANHN
RRPVKNEDSVSNQNRKPLKTEDSTTNQSRRALKMEEGVVSQNRRPLKAEDSLTNQNHRPI
KSEPENEVDDQKPRWPVNNGSGDLGDWLRHRGREVNGTPRGYSPLGWNRSAPITPMCPRP
LPCRSPPKCIQMERHVIRPPPISPPPDRLPLSDGEAHVMRREVWMTVFSHLTHRDLCVCM
RVCRTWNRWCCDKRLWKHINLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQLSWLIN
RLPGLRVLLLSGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQL
DNRSKLRNVEDLRLAGLDVTDASLRLIIRYMPSLSKLDLSYCNHVTDQSVNILTAAGTTT
RDSLTDINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCDQFIAEMSVSVQFEL
IEEKLLQKIS
NT seq 4173 nt   +upstreamnt  +downstreamnt
atggcggaccccgcggagacgtgccctgaatccggacgcaggctgcgctccatctgccgg
aggatgtacgatgagaacgaggacccgtccgatgtggaggagatcacgaacatccgaggg
ttcagcgtcgaggagaagctcgtcagtgacagatacagcgcgaacttcgtccacttgatg
gagggaaaagacttcacttatgaatatgtgcaaagggaggctctcaggatccctctcatt
ttcaaagagaaagatggacttggcatcagaatgcccgatccagaatttacagtcagtgaa
attaaaggtctagttggcagtcgtcggtctgtggatgtcatggacgtgagcactcagaaa
ggctccgaaatgaccatggctcagtttgtccgatattacgagacaccagaggaagagcgg
gacaaactcttcaatgtcatcagcctcgaattcagccacaccaagctggagaacctcatc
aagcggcccacagtggtggatcaagtggactgggtggacaacatgtggcctcctgatctg
aaacacagccaaacagaagccaccaacgtcatctccgagatgaagtaccctaaagtgcaa
aggtactgtttgatgagtgtgaagggctgctacacagatttccacatcgacttcggggga
acttcggtttggtatcatgttttcaagggacagaaagtgttctggctggtgcctcccacg
cttcataaccttgccctgttcgaggactgggtcctgtctggcaagcagagcgatatcttc
ctgggagaccgagcggacggatgccaaagagtggagcttaagcaaggatacaccttcttc
atcccttctgggtggattcatgctgtctacactcctgaggacacactggtgttcggaggc
aacattctgcacagcttcaacatccctatgcagcttaccatccatgagatagagaatagg
accaaggttcattccaagttccgtttccccttctactacgagatatgctggtacgtcctg
gagagataccttcactgcctgaccaagcgctcctacctctctctggaggtccgtaaagag
ccggtgctgatggacgacgagacgaaggcgaacacagagagcccgtcctctgactcgagg
agccaggacatgaacgaggactcgtgcgagactcaagcgagggaggaccagggtgagaaa
gcagagagggctgccctggatggcccctgctctcctgaccatgggaggggccaacacctc
aaagctgttttatcgattgactccgaggacagctgtaatccgggctccacttctctagat
ttccccaaaaccccctcggactctccggcctccgagtctcagaataaatggactcatttg
acagagtttgagctgagcggactgaggacgctggttgagaagctggagtcactgcccgaa
aacaagaaatgtgtcccagagggaatagagaacccacaagccctgctggatgacatcaag
cttgttttaaaagaacatgctgatgatgacccgaagttagcgatcactggacttcctgtg
gtgttgtggcctaagaaaaccataaagccccggcctcccaatcggccgaaacctaagatg
gcagcctcccctgcctctgcagtcaagctgtcagccagtcggggaacatctggtgccagg
agaagacggacccgctgtcggaagtgtgaggcgtgcctgcggacggagtgtggggagtgt
cacttctgtaaagacatgaagaagttcggtggaccgggacgcatgaaacagtcctgcatc
atgaggcagtgcatcgcacctgtcctgccccacacagcagtgtgtctggtgtgtggagag
gcagggaaggaggacactgtggaggacgaggaagagaagttcaacctcatgctcatggag
tgctcaatctgcaatgagatcgttcatcccaactgtctgaaggtaaaagattctaacgga
gtcgtcaatgacgagttgccaaactgctgggagtgtccaaagtgcaaccatgcgggaaaa
acagggaaacaaaaaagggggccagggttcaaatacgcatcaaaccttcccggctcgctg
cttaaagaaacacggttaatccgggattcaaaagaggagcccgactctcccatggtggct
acagcaacggttactgcgctgacgaccacatctgctgtgaagaggaaggcagagcgggaa
gacgtccccaagaggaacgacgaagagcctccgaaaaagcggcccccattgttgtctctg
gatggtacgccccgaccaaggctggaggacaaccccctaaggaaaaagaggaaacttttc
gacaccaacgatgaacctgtgattgtaaaaaagaagaagaaacttttgaaaccggatgat
cccctgactcagaagctgctgcgtcaaatcaagaccgagagggatcacggtgatgaagaa
tatgaccaggacgatcgtgaaggagatggattctgcttggacaggatttattcaaaggag
aaacacgagtacggtgacgaggaccaagaggaagatgagttggaagaggagaagctgaag
aaagagaaagacattagagagaacaaagccaaggtcatgttaaatccactgctgagaaca
tctgcggtcagagaaagtgaccactcctcctccaactctcccagagctggaccaagcagc
gaatcaggagaagctcaggagaagagctccactcagcttaaagctcgccatcagcgccgg
cggctccccaacaaagagctgagcaaagagttcaaccaggaggttcctcagaccgaagac
cgtctgagcaaccagaaccacggttcagtgaagtcagaggacagtccagccaatcacaac
cggcgaccagtgaagaatgaggattctgtgtccaatcagaaccgtaaaccactaaaaaca
gaggactcgaccaccaatcagagccgcagggccctgaaaatggaagagggtgtggtcagt
caaaacagacggccgctgaaagcggaggacagcttgaccaatcaaaaccacaggccgata
aaatctgagcctgagaacgaagtagatgaccagaagcctcgatggcctgtcaacaacggc
agcggcgacctgggtgactggctgcggcatcgggggcgggaggtgaacggaacgccacgt
ggctactcgcccctcggctggaacaggagcgcacccatcacacccatgtgcccccgacca
ctcccctgcaggtcgccgcccaaatgtattcaaatggagcgccatgtgatccgccctcct
cccatcagccccccacctgacaggctgccgctgagcgacggcgaagcccatgtgatgcga
cgagaggtgtggatgacggtgttcagtcacctgacccacagagacctttgtgtgtgcatg
cgcgtctgccggacctggaacagatggtgctgtgacaagcggctctggaagcacatcaat
ctgaaccgatgtaagtccatcacacctctcatgctgagcggcatcatccggagacagcca
gtcgctctggacctcagctggaccaacatctccaagaagcagctcagctggctgatcaac
aggctgccaggtctgcgtgtgctgctgctgtcaggatgctcctgggtggccgtctctgct
ctttgcacctccagctgtcctctcctgcgaactctggatgtccagtgggttgagggactg
aaagacgcccagatgagggacctgctgtcgcctcccactgacaacaggccaggtcagtta
gacaacaggagtaagctccgtaacgtggaggacctgcgtctggcggggttggacgttacg
gacgcatctctgcgcctcatcatccgttacatgccctcgttatccaagctggatctcagc
tactgcaaccacgtgacggaccagtcggtcaacatcctgacggctgcagggacgaccacc
agggactcgctcaccgacatcaacctgtcagtctgcaacagggtcacagaccagtcgctg
acctatttcaagcgctgcgggagcatatgtcacatcgacctgcgatactgcaaacaggtg
accaaggaagggtgcgaccagttcatcgcagaaatgtccgtcagcgtgcagttcgagctg
atagaggagaaactgctgcagaagatcagctag

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