Halomonas sulfidivorans: HNO53_02845
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Entry
HNO53_02845 CDS
T08036
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsv
Halomonas sulfidivorans
Pathway
hsv03030
DNA replication
hsv03410
Base excision repair
hsv03420
Nucleotide excision repair
hsv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HNO53_02845 (ligA)
03410 Base excision repair
HNO53_02845 (ligA)
03420 Nucleotide excision repair
HNO53_02845 (ligA)
03430 Mismatch repair
HNO53_02845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsv03032
]
HNO53_02845 (ligA)
03400 DNA repair and recombination proteins [BR:
hsv03400
]
HNO53_02845 (ligA)
Enzymes [BR:
hsv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HNO53_02845 (ligA)
DNA replication proteins [BR:
hsv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HNO53_02845 (ligA)
DNA repair and recombination proteins [BR:
hsv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HNO53_02845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HNO53_02845 (ligA)
MMR (mismatch excision repair)
DNA ligase
HNO53_02845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNO53_02845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Zn_ribbon_PF0610
DZR_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QTP57758
LinkDB
All DBs
Position
604132..606195
Genome browser
AA seq
687 aa
AA seq
DB search
MSQPDQNTLDEVAKLRAELDDANYRYYVLDEPQLTDAEYDRKLRRLQELEQAHPELVTPD
SPTQRVGAPPDAGFPEVEHAVPMLSLDNALSEEELTAFVRRVAERLETDGEAIRFCCEPK
LDGAAVSLVYEHGVLISGATRGDGRTGEGITSNLRTLRSIPLSLRGEAPELLEVRGEVIM
SHAGFERLNERAREEGGKVFANPRNAAAGSLRQLDPGTTARRPLEFSAYQVARIEPDPGD
ASHSELMAHLKTFGFRTSSQLRVVTGSQGLVDYCRQLGEQRDGLGYDIDGVVIKVDDLRL
QRELGFVSRAPRWAIAFKFPAQEETTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSNA
SLHNADEIARLGVMIGDTVAIRRAGDVIPQVVRVLEERRPDDAREIVFPSRCPVCDSEIE
RLEGEVVARCSGGLYCAAQRKEALRYFASRRAMDIDGLGEKLIDQLVELDWVKTPADLFR
LDVERLATLPRMARKSSENLVAALEKAKQTTLPRFIFALGIREVGEATAANLARHFGTLD
ALMTAELAELEAVEDVGPIVAAHVHTFFRQEHNRETIEALREQGVSWVEESVGERPQPLA
GQTWVLTGTLESMTRDEGKERLQALGAKVAGSVSKKTAAVVAGGAAGSKLAKAQELGVEV
LDEATFLERLAAWERGEGAPDDEETDT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcccgatcagaacactttagatgaagtcgccaagctgcgcgccgagctcgac
gacgccaactaccgctactacgtgctcgacgagccgcagctcaccgatgccgagtacgac
cgcaagctgcgccgcctgcaggaactggagcaggcccaccccgagctggtgacaccggat
tcgccgacccagcgggtcggggcgccgcccgatgccggcttccccgaggtcgagcacgca
gtgcccatgctgtcgctggataacgccctgagcgaggaggagctcaccgctttcgtcagg
cgcgtcgccgagcggctggaaaccgacggcgaggcgatccgcttctgctgcgagcccaag
ctcgatggcgccgccgtgtcgctggtctacgaacatggcgtactgatcagcggtgcgact
cgcggcgacgggcgcaccggcgagggcatcacctccaacctgcgcacgctgcgctcgatt
ccgctcagcctgcgcggcgaggcccccgagctgctcgaagtgcgcggcgaggtgatcatg
agccatgccggtttcgagcggttgaacgagcgcgcccgcgaggagggcggcaaggtcttc
gccaacccgcgtaacgccgcggcgggtagcctgcgccagctcgaccccggcaccaccgct
aggcggccgctggaatttagtgcctaccaggtggcacgcatcgagccggaccctggcgat
gccagccacagtgagctgatggcgcacctcaagaccttcggctttcgcaccagctcccag
cttcgtgtcgtcaccggcagccagggcctggtcgactactgccgccagctgggcgagcag
cgcgacggtctgggttacgacatcgacggcgtggtaatcaaggtcgacgacctgcgcctg
cagcgtgagctgggcttcgtctcgcgggcaccgcgctgggccatcgccttcaagttcccc
gcccaggaggaaaccactcggctcaatgacgtcgagttccaggtcggccgcaccggtgcg
atcacgccggtggcgcggctcgagccggtctcggtggccggggttaccgtctccaacgcc
agcctgcacaatgccgacgagatcgcgcggctcggcgtgatgatcggcgacaccgtggcg
attcgacgggccggcgacgtcattccccaggtagtgcgggtactcgaggaacggcggcca
gacgacgctcgcgagatcgtcttccccagccgctgcccggtgtgcgactccgagatcgag
cgtctcgagggtgaggtggtggcgcgctgctccggcgggctctactgtgccgctcagcgc
aaggaggcgctcaggtacttcgcctcgcgccgagcgatggacatcgatggcctcggcgag
aagctcatcgaccaactggtcgagctcgactgggtcaagacgcctgccgatctgttccgg
ctcgacgtcgagcgcctggccacgcttccgcgcatggcccggaagtcctccgagaatctg
gtggcggcgctggaaaaggccaagcagaccaccctgccacgcttcatcttcgcgctgggc
atccgcgaagtgggggaggccacggcggccaacctggcgcgccacttcggcaccctggac
gcgttgatgaccgccgagctggccgagctcgaggcggtggaggacgtcggcccgatagtg
gccgcccacgtacataccttcttccgccaggagcacaaccgcgagaccatcgaggcactg
cgcgagcagggcgtgagctgggtcgaggagagcgtcggcgagcgtccccagccactggcc
gggcaaacctgggtgctcaccggcacgctcgagagcatgacccgcgacgagggcaaggag
cgcctgcaggcgctgggcgccaaggtggccggcagcgtatcgaagaagaccgccgccgtg
gtggccggcggggcggccggcagcaagctggccaaggcccaggagctgggcgtggaagtg
ctcgacgaggccactttcctcgagcgtctggcggcctgggagcgcggtgaaggcgcaccc
gacgacgaggagaccgacacatga
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