Hymenobacter swuensis: Hsw_2010
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Entry
Hsw_2010 CDS
T03055
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsw
Hymenobacter swuensis
Pathway
hsw03030
DNA replication
hsw03410
Base excision repair
hsw03420
Nucleotide excision repair
hsw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hsw_2010
03410 Base excision repair
Hsw_2010
03420 Nucleotide excision repair
Hsw_2010
03430 Mismatch repair
Hsw_2010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsw03032
]
Hsw_2010
03400 DNA repair and recombination proteins [BR:
hsw03400
]
Hsw_2010
Enzymes [BR:
hsw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hsw_2010
DNA replication proteins [BR:
hsw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hsw_2010
DNA repair and recombination proteins [BR:
hsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hsw_2010
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hsw_2010
MMR (mismatch excision repair)
DNA ligase
Hsw_2010
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hsw_2010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
Auto_anti-p27
Zn_ribbon_NUD
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-ProteinID:
AHJ97605
UniProt:
W8F7A0
LinkDB
All DBs
Position
complement(2297296..2299404)
Genome browser
AA seq
702 aa
AA seq
DB search
MTDIQLQITALTERLHHLNYQYYQRDISEIPDQEFDELLAELARLEQQYPDLAHPNSPTQ
RVGGTITKQFPTAEHRYPMLSLGNTYSEADLREFDERVRKGLEGADVAYVCELKFDGVAM
SLTYQQSQLTQGVTRGDSTRGDVVTSNVRTIRNLPLHLRPEGAPQPPEFEVRGEIFMPLP
VFAELNQEREANGEALLANPRNAASGALKLQDSTQVAARKLRFYAYSFLMPGRNQFPTHS
ASLEALRAWGLPVSDTWRRCGTIEEVLDFVHQWDKKRFELPVATDGIVIKVDDFRQQELL
GFTSKSPRWAIAYKYPAEAGRTRLQAIQYQVGRTGAVTPVALLDPVPLAGTVVKRASVHN
ANQIAALDLRLGDMVFVEKGGEIIPKITGVDVAARPADSQPIVYPTECPACGTPLIRPEG
EAHFRCPNDRGCPPQRKAKLEHFVSRKALNIDGLGAETVGRFFDLGLVTDAASLYDLPAK
AAELAQLDRMGEKSVQRLMAGLEASTQVPFDRVLFGLGIRYVGETVAEKLVNHYRTVEAL
AAATATDLAAVPEVGGVIAESAAAWFQEPENQQLIERLRAAGLQLALTGEAPQPQSDRLA
GLTFVLSGVFEQHSREELQHLIEQHGGKITGSISKKLSYLVAGDKMGPAKREKATSLNVP
IIGETDLLAMLPTATDAPETPEEKHEAAAPAPPSAGQQGSLF
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatattcagctacagataaccgcccttaccgagcgcctccaccacctcaactac
caatattaccagcgcgacatcagcgaaataccggaccaggagtttgacgagctgctggcc
gagctggctcgcctggagcagcagtacccggacctggcccaccccaactcccccacccag
cgcgtgggcggcaccatcaccaagcagtttcccaccgctgagcaccgctaccccatgctc
agcctgggcaacacctactccgaggccgatctgcgcgagtttgacgaacgggtgcgcaag
ggcctggaaggagccgacgtggcctacgtgtgcgagctgaagttcgacggtgtggccatg
agcctgacctaccaacagagccagctcacgcagggcgtcacgcgcggcgacagtacccgc
ggcgacgtggtgaccagcaacgtgcgcaccatccgcaacctgccgctgcacctgcgccct
gagggcgcgcctcagcctccggagtttgaggtgcgcggcgagatttttatgcccctgccc
gtgtttgcggaactgaaccaggagcgcgaagccaacggcgaggccctgctggctaacccg
cgcaacgccgcctcgggcgcgctcaagctccaggactcgacccaagtagcggcccgcaag
ctgcgcttctacgcctactccttcctgatgcccggccgcaaccagtttcccacccacagc
gcctcgctggaagccctgcgcgcctggggcctgccggtgtcggatacctggcggcggtgc
ggcaccatcgaggaagtgctggatttcgtgcaccagtgggacaaaaagcggtttgaactg
cccgttgccaccgacggtatcgtgattaaggtggacgacttccgccagcaggagctgctg
ggcttcacctctaaaagtccccgctgggccattgcctacaagtacccggccgaggccggc
cgcacccgtttgcaggccattcagtaccaggtggggcgcaccggggccgtgacgccggtg
gccctgctcgacccggtaccgctggccggcactgtggtgaagcgcgcctcggtgcacaac
gccaaccagattgccgccctcgatttgcgcctcggcgacatggtattcgtggagaagggc
ggcgagattatccccaagattacgggcgtggacgtggccgcccgccccgccgacagccag
cccattgtataccccaccgagtgcccggcctgcggcaccccgctgatccggcccgagggc
gaggcccacttccgctgccccaacgaccggggctgcccgccccagcgtaaagccaagctg
gagcacttcgtgtcgcgcaaggccctgaacatcgacggactgggagccgaaaccgtgggc
cgcttcttcgacctgggcctggtaacggacgcggcctcgctctacgacctgcccgccaaa
gctgccgagctggctcaattagaccggatgggcgagaaatctgtgcagcggctcatggcc
gggctcgaagccagcacgcaggtgccctttgaccgggtgctgttcgggctgggcatccgg
tacgtgggcgaaactgtggccgaaaagctggtgaaccactaccgcaccgtggaggccctg
gccgccgccacggccaccgacctggccgccgtacccgaagtaggcggcgtcattgccgag
tcggcggcagcatggtttcaggagcccgagaaccagcagttgatagaacgcctgcgggca
gccgggttgcagctggcccttaccggcgaagctccccagccccagagcgaccggctggcg
ggcctgacgtttgtgctgtcgggggtgtttgagcagcatagccgcgaggagctgcagcac
ctgattgagcagcacggcggcaaaatcacgggcagcatcagcaagaagctcagctacctg
gtggctggcgacaaaatgggccctgccaagcgcgagaaagccacctcgctcaacgtaccc
atcatcggtgaaaccgacctattggccatgctccccaccgccaccgacgcgcccgaaacg
ccggaggagaaacatgaagctgccgctccagccccaccaagtgccggccagcaaggctcc
ttgttttaa
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integrated database retrieval system
