Hydractinia symbiolongicarpus: 130612339
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Entry
130612339 CDS
T09218
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy04120
Ubiquitin mediated proteolysis
hsy04140
Autophagy - animal
hsy04144
Endocytosis
hsy04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130612339
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130612339
04140 Autophagy - animal
130612339
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
130612339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsy04131
]
130612339
04121 Ubiquitin system [BR:
hsy04121
]
130612339
Enzymes [BR:
hsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130612339
Membrane trafficking [BR:
hsy04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
130612339
Ubiquitin system [BR:
hsy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
130612339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
TRAF3_RING
Sina_ZnF
zf-C3HC4_4
zf-RING_2
U-box
zf-TRAF_2
zf-C3HC4_3
zf-RING_5
RING_XB3-XBAT31
zf-rbx1
Taxilin
Sec10_N
T7SS_signal
SHE3
DUF948
Motif
Other DBs
NCBI-GeneID:
130612339
NCBI-ProteinID:
XP_057289627
LinkDB
All DBs
Position
10:11836688..11845240
Genome browser
AA seq
511 aa
AA seq
DB search
MSSMNSFTSMDVDDNPEVLEQGFDELFDPPAPDAYECPICLLVLNKPMQTVCGHRFCRGC
ILKVLREGRPNCPIDNELLSESQIYPDNFARREILSLTVHCHNSREFGCQWMGPLKDLEK
HHEDCEFANVLCPNNCGTRIARSELKEHQETACPRRIVSCDFCNIKVVYQRLVEHRERCN
RFPVDCPNSCSIGKIPREELEKHMESDCPKSVVKCPFRDAGCTFEGTREDVDEHVSKGAG
DHMRSMMKSLRALKKSQDENTVSIRKLNETGFGGEKASIFESPWNGRDGNILKAEMDKLA
KKLRDLELKTSQWKSGTDMFRNEYRQTTADFESKFDQLNQTVQELQTLTNEINARVWCGK
FIWRITNFDNLFKQAQSGDVPAIHSLPFYTGVPGYKMCLRVNLNGIDSGANSHVSMFVHL
MQGEFDSVIEWPFPGSITLTIMDQDTRSEPQHVKETLTARPTLQAFLRPKTNRNHKGYGY
VEMMPHSTLRTYGYIKDDTMIVRVDVKMPNR
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtatgaattctttcacatctatggatgtagacgataatcctgaagttttagaa
caaggttttgatgaattatttgatccacctgcacctgatgcttatgaatgccccatttgt
ttgctggtattaaacaaaccaatgcagacggtttgtggtcaccgtttttgcagaggatgt
attcttaaagttctcagggaaggtagaccaaactgtcccatagacaatgaacttttaagt
gaatctcagatttacccagataatttcgcacgaagggaaatcctctcattaacagtacat
tgtcacaatagcagagagtttggttgccagtggatgggacctttaaaagacctggagaaa
catcatgaagactgcgaatttgcgaatgtgttgtgtccaaataactgtggcactagaatt
gctcgtagtgaacttaaagaacatcaagagactgcttgtccgagaagaatagttagttgc
gatttctgcaatattaaagttgtctatcaaaggcttgtggagcacagagagcgctgtaat
agatttccagttgattgtcccaacagttgctcaatcggtaaaataccacgagaagaactt
gaaaaacacatggaatccgattgcccgaagtcagttgtaaaatgtccatttcgtgatgca
ggttgtacatttgagggaacaagagaagatgtggatgaacatgtgagtaaaggtgctgga
gatcacatgcggagtatgatgaaatcattgcgagcattgaagaaatcacaagatgaaaat
accgtcagtattcgtaaactgaacgaaacaggtttcggtggagaaaaagcgtcaatattt
gagtcaccatggaatggcagagatggaaatattctcaaagcagagatggacaaactagcg
aaaaagttacgcgatcttgaattaaagacgagtcagtggaaatctggtacggatatgttt
cgcaacgagtacagacaaacgacagcagatttcgaatcgaaatttgaccagctaaatcaa
acagtacaggaactacaaactctcacgaatgaaatcaacgcgcgagtttggtgtgggaaa
tttatatggaggattacaaactttgataatttgtttaaacaagcgcaaagtggcgacgtt
ccagctatccatagtcttccattttatacgggtgtcccaggatacaagatgtgtttacgc
gtcaacttgaatggaattgattctggtgcaaacagtcacgtgtccatgtttgttcattta
atgcaaggtgaatttgacagcgtcatcgaatggcctttcccaggcagcataacactaacc
ataatggatcaagacactcgtagcgaaccgcagcacgtaaaggagacattaacagcaaga
ccgacattacaggctttcttaagaccgaaaaccaatcggaaccataaagggtatgggtat
gtcgaaatgatgcctcactctacgttacgcacatatggttatataaaggatgacacaatg
atagtaagggttgatgtaaaaatgccgaacaggtga
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