KEGG   Hydractinia symbiolongicarpus: 130612339
Entry
130612339         CDS       T09218                                 
Name
(RefSeq) TNF receptor-associated factor 6-like
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
hsy  Hydractinia symbiolongicarpus
Pathway
hsy04120  Ubiquitin mediated proteolysis
hsy04140  Autophagy - animal
hsy04144  Endocytosis
hsy04620  Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:hsy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130612339
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    130612339
   04140 Autophagy - animal
    130612339
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    130612339
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsy04131]
    130612339
   04121 Ubiquitin system [BR:hsy04121]
    130612339
Enzymes [BR:hsy01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     130612339
Membrane trafficking [BR:hsy04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    130612339
Ubiquitin system [BR:hsy04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    130612339
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX TRAF3_RING Sina_ZnF zf-C3HC4_4 zf-RING_2 U-box zf-TRAF_2 zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 zf-rbx1 Taxilin Sec10_N T7SS_signal SHE3 DUF948
Other DBs
NCBI-GeneID: 130612339
NCBI-ProteinID: XP_057289627
LinkDB
Position
10:11836688..11845240
AA seq 511 aa
MSSMNSFTSMDVDDNPEVLEQGFDELFDPPAPDAYECPICLLVLNKPMQTVCGHRFCRGC
ILKVLREGRPNCPIDNELLSESQIYPDNFARREILSLTVHCHNSREFGCQWMGPLKDLEK
HHEDCEFANVLCPNNCGTRIARSELKEHQETACPRRIVSCDFCNIKVVYQRLVEHRERCN
RFPVDCPNSCSIGKIPREELEKHMESDCPKSVVKCPFRDAGCTFEGTREDVDEHVSKGAG
DHMRSMMKSLRALKKSQDENTVSIRKLNETGFGGEKASIFESPWNGRDGNILKAEMDKLA
KKLRDLELKTSQWKSGTDMFRNEYRQTTADFESKFDQLNQTVQELQTLTNEINARVWCGK
FIWRITNFDNLFKQAQSGDVPAIHSLPFYTGVPGYKMCLRVNLNGIDSGANSHVSMFVHL
MQGEFDSVIEWPFPGSITLTIMDQDTRSEPQHVKETLTARPTLQAFLRPKTNRNHKGYGY
VEMMPHSTLRTYGYIKDDTMIVRVDVKMPNR
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgtcaagtatgaattctttcacatctatggatgtagacgataatcctgaagttttagaa
caaggttttgatgaattatttgatccacctgcacctgatgcttatgaatgccccatttgt
ttgctggtattaaacaaaccaatgcagacggtttgtggtcaccgtttttgcagaggatgt
attcttaaagttctcagggaaggtagaccaaactgtcccatagacaatgaacttttaagt
gaatctcagatttacccagataatttcgcacgaagggaaatcctctcattaacagtacat
tgtcacaatagcagagagtttggttgccagtggatgggacctttaaaagacctggagaaa
catcatgaagactgcgaatttgcgaatgtgttgtgtccaaataactgtggcactagaatt
gctcgtagtgaacttaaagaacatcaagagactgcttgtccgagaagaatagttagttgc
gatttctgcaatattaaagttgtctatcaaaggcttgtggagcacagagagcgctgtaat
agatttccagttgattgtcccaacagttgctcaatcggtaaaataccacgagaagaactt
gaaaaacacatggaatccgattgcccgaagtcagttgtaaaatgtccatttcgtgatgca
ggttgtacatttgagggaacaagagaagatgtggatgaacatgtgagtaaaggtgctgga
gatcacatgcggagtatgatgaaatcattgcgagcattgaagaaatcacaagatgaaaat
accgtcagtattcgtaaactgaacgaaacaggtttcggtggagaaaaagcgtcaatattt
gagtcaccatggaatggcagagatggaaatattctcaaagcagagatggacaaactagcg
aaaaagttacgcgatcttgaattaaagacgagtcagtggaaatctggtacggatatgttt
cgcaacgagtacagacaaacgacagcagatttcgaatcgaaatttgaccagctaaatcaa
acagtacaggaactacaaactctcacgaatgaaatcaacgcgcgagtttggtgtgggaaa
tttatatggaggattacaaactttgataatttgtttaaacaagcgcaaagtggcgacgtt
ccagctatccatagtcttccattttatacgggtgtcccaggatacaagatgtgtttacgc
gtcaacttgaatggaattgattctggtgcaaacagtcacgtgtccatgtttgttcattta
atgcaaggtgaatttgacagcgtcatcgaatggcctttcccaggcagcataacactaacc
ataatggatcaagacactcgtagcgaaccgcagcacgtaaaggagacattaacagcaaga
ccgacattacaggctttcttaagaccgaaaaccaatcggaaccataaagggtatgggtat
gtcgaaatgatgcctcactctacgttacgcacatatggttatataaaggatgacacaatg
atagtaagggttgatgtaaaaatgccgaacaggtga

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