Hydractinia symbiolongicarpus: 130623716
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Entry
130623716 CDS
T09218
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy04137
Mitophagy - animal
hsy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130623716
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130623716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130623716
04121 Ubiquitin system [BR:
hsy04121
]
130623716
Enzymes [BR:
hsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130623716
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130623716
Ubiquitin system [BR:
hsy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
130623716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
MATH
zf-TRAF
Sina_ZnF
COG6_N
zf_C2H2_13
Sgf11
zf-C3HC4_2
RNA_pol_N
CEP104_ZnF
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
130623716
NCBI-ProteinID:
XP_057295210
LinkDB
All DBs
Position
13:20822523..20847409
Genome browser
AA seq
443 aa
AA seq
DB search
MSLNSKYNQEEGYSVNLQLDPSQQVKYICLLCKKVLKNPVQTIRGLLACESCYYRNFSAN
GGINCPLDGEPIAREEIFKDNGRAREIRNLICACPYRNDGCDWTDIVGKFEEHQYNCNFL
PVACIACGRPVGNSQYVQHLQSRCDKIDTLTECVYAIDGCKYKPITKDDHIKHLHENTLK
HASLRLSNQQKSQYSFAAFQQVAEEVLQQQAQINSMMNLVSSLHNQLHEARADEKILLKK
VQNMQANIPQVSASNSSSLDQERLKEIKNLQSTIAILNKNISDFDLRQQLLENTNYKGRI
LWKIDQLQQRMQLALIGRVTALHSAPAFTQKYGYKFCGRVYLNGDGIGKCSHVSLFFILM
KSEYDNLLEWPFQHTVTFTLINQQDEKKNVLESFATDVASSSFQKPTREMNIAAGCPLFI
QRDHLLNGGFVKDDCIFVEINVQ
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaaattcgaaatataatcaagaagaaggatattctgtcaatctgcaattagat
ccatcccaacaagtgaaatacatttgtttactttgcaagaaagttctaaagaatccagtg
cagacgatacgtggtttgctagcttgtgaaagctgctactatcgaaatttcagcgccaat
ggaggaattaactgcccacttgacggagaaccaattgcaagagaggaaatatttaaagat
aatggtagagctcgagaaattcgaaatcttatttgcgcttgtccttatcgaaatgacggt
tgcgattggactgacattgtcggaaagttcgaggaacatcaatacaattgcaacttctta
cctgtggcatgcattgcctgtggaagacctgtcggaaacagtcagtacgtacaacacttg
cagagcaggtgtgacaagattgataccctgacagaatgtgtgtatgcaatcgatggatgc
aaatacaagccaataacaaaagatgatcatattaaacacttgcacgagaatacgctcaag
catgcttcactgcgcttatccaatcagcaaaaatctcagtactcctttgctgcttttcaa
caagtagctgaagaggtgttacagcaacaggcacaaatcaactcgatgatgaatctagtt
tcttcattacataaccaactacatgaagcacgtgcagacgaaaaaattttattaaaaaag
gttcaaaatatgcaagcaaacattccacaagtttcagcgtcaaattcttcttcccttgat
caagagaggctgaaagaaatcaaaaatttacaatctacaattgctattttaaataaaaac
atttctgattttgatttacgacaacagttgcttgaaaatacaaattacaagggacggatt
ttatggaagattgatcaactgcaacaacgtatgcaattagctcttatcggacgtgtgaca
gctctccacagcgcacctgcctttacccaaaaatatggctacaaattttgtggtagggta
tatcttaatggagacggtatcggtaaatgttctcacgtttctttgttttttatcttgatg
aaatcagagtatgataaccttctggaatggccgtttcaacacactgtcactttcactttg
attaaccaacaagacgaaaagaagaatgtgttggaaagctttgccactgatgttgcatca
tcaagttttcagaaacctacaagagagatgaatatcgctgcaggctgtccgcttttcatc
caacgcgatcacttattaaatggcgggtttgttaaagacgattgcatttttgttgaaatt
aatgtacagtaa
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