Hydractinia symbiolongicarpus: 130647496
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Entry
130647496 CDS
T09218
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
hsy
Hydractinia symbiolongicarpus
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsy03036
]
130647496
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130647496
Chromosome and associated proteins [BR:
hsy03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
130647496
DNA repair and recombination proteins [BR:
hsy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
130647496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
130647496
NCBI-ProteinID:
XP_057309351
LinkDB
All DBs
Position
6:complement(20964931..21004091)
Genome browser
AA seq
2012 aa
AA seq
DB search
MASEVVHKMTSNGSGNHFKQNFVYVFDRRTGDKPGLKLEFSDFTTYEALLTNLKLKFKIG
EDESFAVVNTERVPINSDETLDKVVENGNTLYILTSLDQELSAPVREHVQFLPHYDTLTK
SGMYEYYASEGQDPLPFAFAELIDNALYATANNSGPRRIEIRLMFDDTTNRNSVCILDNG
RGMTSKDLNEWAIYRLSKFNRRWRNKQFIEKNKDDVEEMPRSLNSDISYFGVGGKQAIFF
IGNATRMISKSRQSKDVHEMILSKDDFESKERNKEAIYTGSIYNRRVGDACHVNTDDENL
RKLILEEGEHDSFTNVFITGVKPSHVAYMKSHFEIWCTELAHIYHYYLHGPYGNVKQPGN
GNTSNFQKIDLQVSLFERGKPPKHISLKDVDDDVQTLYIRSAASTFDFKAHVNGAQVEGQ
LRYHPFLYDKETYPTAADVGAPDSIGDEDMIIEDSRAPRGNIPIFECFWNGRLIPYTNIK
SLEWCENPRKRTALPIECYNRFSGVLWTNDSFQVSTNKLTFIDLETKLREKDTLYNRVIL
GQEQRLQISKAFFDWIKNSHETFDKQIRFFGLKGQTKRSDLSARKNQDLWTLFSGIEWHG
KTFQEGKLVRTFKTNPVIIGTIKQFLLHGEYESDEVYGTGGEVEIIQEPTSLYGQKRIFP
LAKLDLLFNQNEAADFISKEELKLPSKLVIDWPEGNELKTNSDVPAGSTIGAMKVDIKNG
KGESIHKIPGDRGKRLLVELKVVWHSEKSGNKVIIQHTCQHGGKSWPYWFRKMENTVNLG
KHTLSLNVVLADSSILSSSKSLPKEIIKFNVIEGSPFKFVIAQIEAPLRIGVPFQILLKL
VDYYGNTTKPGKDRETPTLASNGDITYSHSGFSIRGSLLAIKDVVAHGSLGSSSGKDFNM
KIVIPDLDENTQTTKLRFLPGLPAKLDVKPLNEVIKIENGGTINMAVEIKDIAGNITFQP
RLNVVCKLTGSPGLPSFMVDCSSTGKGSLISPKIDIEKIRENVVIEAKIDLQHCKSVDPV
VRTVHVSPSTRPARFQLFYLPHDSGTPLRIQNDEELCCKAGNLITGITYRMLDEGNRLIN
IDTSISSKIKVNWAAKLSKDQLKLGNLPDIKTPTSTDETKYCQILYNGVKSVNLSFIVRT
IPNNAQILSCSCSENKILPNEKAERIVELNITDKHGNSLDISNVDLSKFEVSGDGLGVSS
LPKVLSKDGKLLMNVQFDDITPGFREINVKYGALETYQRLEIKSGPATNIKLVNFDNTEP
ITLFNGRAWSNPITMQLIDAQGYSCNESNIRVVLGKDGNIKLTPANLTTKRTDNKGQVTF
KDFTVSTPACQGMFELVPKAIIGKNTVTGPTITFEVQPDPFKPISVEMEFNGTAVQAGGA
LPVIESYVVAEDKSPMSNVKAREMVLKLVPHNTSQLRKEFTYLPSKTIELDKVNHFYFRN
VTAPEKIGRYSLTVQYVGKGGATAVLQANPIIVDILASDPLYLVPLNNLPTPTVSNVNKL
SSRTLLKNVTLHLLDAYKNKSGENWSGEVIVAVRREGKTPLLNNNQTTVKFPVVKGECMI
DLLTVPANAEGRNGQEYVLKFNFELDSKQRHNVAPYNLPFVFFNDAQKHLQMSQLVKERD
SLVQNITTYKTFFSTTRQLTQEMKVAVDEAAKQEMKLRSEVFAALQSKITNKLDTVEKID
RFFIELNNCKNEINRKPRRECKLQPARRDPLVLGKVAHLAEVKDDDVARVLSWHMAGDMD
CIVTMTTEKAQQIYKESRGNLQVLPLDSIYKKNITDVSRPLPHQRIRNNTWTPTGNPIYA
RNLLSFKADAQCCNTVFGMLLGDLIIMDDLESANNYRLHVVKAVYCPTILTRSGDRLRSN
GKFGGLSNKAPVLERLHGAVFAAPLNTEVNRIEKCLDLLQGLKAAVENHAKASEELAYQI
RDGESQEMQSKRVECDESEKQLKEIERRLGMTPSRFESDGILTTKSGVSSKLESPDTRRA
SKRPTGVSTPTISPSKKIKQSPKSTPRTRRSK
NT seq
6039 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgaagtggtgcacaaaatgaccagtaacgggagtggaaatcattttaaacag
aacttcgtttatgtatttgatagaagaactggtgataaacctggattaaaactggaattt
agcgatttcacaacatatgaagctttattaaccaacttaaaactcaaatttaaaattggt
gaggatgagagttttgctgtagtgaatactgaaagagtgcccataaacagtgatgaaaca
cttgataaggttgtggaaaatggcaatactttatatatacttacatctcttgatcaagaa
ctctctgctccagttcgagaacatgtccaatttcttccacattatgatacccttacaaaa
agtggaatgtatgaatactatgcaagtgagggacaagatccattgccctttgcatttgct
gaacttattgataatgcattgtatgcaacagctaacaattcaggcccaaggagaattgag
ataagactgatgtttgacgatacaactaatcgaaattctgtttgcattttggacaatggt
agaggaatgacatctaaagacctgaatgaatgggcgatatacagactttcaaagtttaac
cgacgctggagaaataaacaattcattgaaaagaacaaggatgatgttgaagaaatgcca
cgatcattgaatagtgatataagttattttggtgttggaggaaagcaagctatttttttt
atagggaatgctacaagaatgattagtaaaagtaggcagtcaaaagatgtgcatgaaatg
attttgtcaaaagatgattttgaatcaaaagaacgaaataaagaagcgatttatactgga
agtatctacaacagaagggttggtgatgcttgccatgtgaataccgatgacgagaacttg
cgaaaattgatattagaagaaggagaacatgatagttttacaaatgtttttataactggt
gttaaaccatctcatgttgcgtacatgaaaagtcattttgaaatatggtgcacagaatta
gctcacatctatcattactatcttcatggtccctatggtaacgtgaagcagcctggcaat
ggcaacacctcaaattttcaaaaaatagacctacaagtttctctatttgagcgtggaaaa
ccacccaaacatatttccttaaaagacgttgatgatgatgtgcaaactttatatattcgg
tctgctgcttcaacatttgattttaaagcgcatgttaatggtgctcaagtggaaggacaa
ctacgatatcacccttttttatatgataaggaaacatatcccactgctgcagatgttggt
gctcctgacagcattggtgatgaggatatgattattgaagatagccgtgcaccacgtgga
aacataccaatttttgaatgtttttggaatggtagattgataccgtatacaaatatcaaa
agtcttgagtggtgtgaaaatcctagaaagagaacagcactacctattgaatgttacaac
agattttctggagttttgtggacaaatgattcatttcaagtgagcacaaacaagttgacg
tttatagaccttgagacgaaactacgagagaaagacactctctataacagagtcatctta
ggccaggagcaacgtttacagatttcgaaagccttttttgactggatcaagaattcccat
gaaacttttgataaacaaatacgtttttttggtttaaaaggccagactaaacgcagtgac
ctctctgctagaaaaaatcaagacttatggacattattctctggtattgaatggcacggt
aaaacatttcaagagggaaaactggtacgaacatttaaaaccaatccagtcataattgga
acaattaaacaatttttattacatggcgaatacgagtcagatgaagtgtatggcacagga
ggagaagttgaaattattcaggaaccaacatccttgtatggacaaaaaagaatatttcca
ctggctaagttggatttattgttcaatcaaaatgaagcagctgactttatcagtaaagaa
gagttaaaactaccatcaaagctggtcattgattggcctgaaggtaatgaactgaaaaca
aattctgatgtacctgctggctccactataggtgccatgaaggttgatattaagaatggt
aaaggcgaatccattcataaaataccaggtgacagaggaaagcgtttgctggtagaatta
aaagttgtttggcattctgaaaagagtggaaacaaagttattatacaacatacatgtcaa
cacggtggaaagagctggccatactggtttcgcaaaatggagaacacagtcaatcttgga
aagcacaccttatcattaaatgttgttcttgctgactcatcaattttatcatcctcaaag
tcattacccaaggagattatcaagtttaatgtaatagagggttctccttttaagtttgtt
attgcgcaaattgaagcacctttacgtattggagttccatttcagattctgttaaaacta
gtcgattattatggtaacacaacaaaacctggtaaagacagagaaactccaaccctagca
tcaaatggtgacataacatattctcactctggcttttcaataagaggctcgctgttggcc
ataaaagacgtagttgcccatggttcactcggctctagtagtggaaaggattttaacatg
aaaatagttataccggatttagatgaaaatacacaaactacaaaattacgttttcttcca
ggcttaccagcaaagttggatgtaaagcctcttaatgaagtgattaaaatagaaaatggt
ggcactatcaatatggctgtcgaaattaaagatattgctggaaatattacatttcaacct
agattaaatgtggtttgcaagctaactggatcacctggtcttccttcttttatggtggat
tgtagttctactgggaaaggttctttaatcagtccgaaaattgacatagaaaagatccgt
gaaaatgttgtgattgaagcaaagattgatttgcaacactgcaaatcagttgatccagtt
gttaggacggttcatgtaagtccaagtactcgccctgctcgctttcaactgttctacttg
cctcatgactcaggtacaccattgcggatacaaaacgacgaagagttatgttgcaaagca
ggaaacctaattactggaatcacatacagaatgttggatgaaggaaatagattgatcaac
attgacacaagcatttcttcaaaaatcaaagtcaactgggctgccaaactatctaaggat
caactgaagcttggaaatttacctgatatcaaaacacctacgagcactgatgaaacgaaa
tactgtcaaatcttatacaatggtgtgaagtctgtcaatttgtcttttattgtcagaaca
attccaaataatgctcaaatattgtcatgttcctgttcagaaaacaaaattttgccaaat
gagaaagctgaaagaatcgttgaacttaatatcacagacaaacatggaaattcgcttgat
atatcaaatgtcgacttatcaaagtttgaagtcagtggagatggattaggtgtttcatct
ctacccaaagtgttatctaaggatggaaaacttcttatgaatgtgcaatttgatgacatt
actcctggatttcgtgagataaatgtcaaatatggagcgcttgaaacctaccaacggcta
gaaattaaatcagggccagcaacaaacattaaactggtgaattttgataatactgagcct
ataaccttatttaatggtcgtgcatggagtaatcctatcacaatgcagctaatagatgct
cagggttattcttgtaatgaatcaaatattcgtgtcgttcttggtaaagatggaaatata
aagcttactccagccaatctaaccacaaaacgaacagacaacaaaggacaagtaactttc
aaagatttcactgtgtctacaccagcgtgtcaagggatgtttgagttggtcccgaaagct
attattggaaaaaacactgtgactggtccgacgatcacttttgaagtccaacctgaccca
ttcaaacctatatctgttgaaatggaattcaatggtacagctgtccaagctggtggagca
ctgccagtaattgaatcatatgtggtagctgaagacaaaagtcctatgtcgaatgttaaa
gcgagggagatggtgctaaaactggttcctcataatacaagccagcttagaaaggaattc
acatacctaccatccaaaaccattgaactagacaaagttaatcatttttattttagaaat
gtcacagctcctgaaaaaataggtcgctactctttgacagtgcaatatgttggcaagggc
ggtgccacagccgttcttcaggctaatccgattatagtggacatattagcaagtgatccg
ttgtatttggtgccattgaacaatctcccgacaccaactgtttcaaacgtaaataaactt
tcaagtcgaacgctgctgaagaatgttacattgcatttattggatgcgtataaaaataaa
tctggcgaaaattggtctggtgaagttatcgttgctgtcagaagagaagggaagacgccg
ttgttaaacaataatcaaactacagtaaagtttcctgtagtgaaaggagaatgtatgata
gaccttttgacagttccagcgaatgcagaaggacgtaacggacaagaatatgttctaaaa
ttcaactttgagttggatagcaaacaaagacataacgtggcaccgtataatcttcctttt
gttttttttaatgacgcacagaaacacctacagatgtctcagctagttaaagagagagat
tcgttagtccaaaacatcacgacatacaaaacatttttttccactactagacaactaacg
caggaaatgaaagttgcagttgatgaggcagctaaacaagaaatgaaattgcgatcagag
gtttttgcagcactgcaaagcaaaataacgaataagttagatacggtggaaaagatagat
cgtttttttatcgagctaaataattgcaagaacgaaataaatcgcaaacctcgccgcgag
tgcaaacttcagccagcacggcgtgacccacttgtgttgggaaaagtagctcacctagca
gaggtaaaagatgatgatgtcgcgagggtattgtcatggcatatggcgggcgacatggat
tgtatagttaccatgacgactgagaaggctcaacaaatttataaggaatcgcgagggaat
ttacaagtgttgccattggactcaatttataagaaaaatatcacagacgtttctagaccg
ttaccacatcaaagaattcgtaacaatacttggacgccaactggaaatccaatctatgca
agaaatttgttgtcttttaaagctgatgcacagtgttgcaatacagtgtttggaatgctg
cttggtgatctgattattatggatgatcttgaatcggcaaataactatcgccttcatgta
gtaaaagctgtatattgtcctactattctgacaagaagtggtgatagactgcgtagtaat
ggaaaatttggcggcttatccaacaaagcgcctgttctcgagagacttcacggagctgtt
tttgctgcaccgctgaacactgaggtgaatcgtattgagaagtgtctagatttgcttcag
ggtttaaaagctgctgtggaaaaccacgcaaaagcaagcgaagagctcgcgtaccaaatc
agagatggagaatctcaagaaatgcaatccaagcgtgtagaatgtgatgaatctgaaaag
caactcaaagaaattgaacgacgccttggtatgacgccgtcaagatttgaatccgacggc
attctgacgacgaagagtggggtgtcgtcaaagttggagtcacctgatacgcggcgcgcc
tctaaaaggcctacaggcgtatctacgcccactataagcccgtcgaaaaaaatcaaacag
tcgcccaaatctacccccagaacacgacgaagcaaataa
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