Hydractinia symbiolongicarpus: 130656727
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Entry
130656727 CDS
T09218
Name
(RefSeq) TNF receptor-associated factor 1-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy04137
Mitophagy - animal
hsy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130656727
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130656727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130656727
04121 Ubiquitin system [BR:
hsy04121
]
130656727
Enzymes [BR:
hsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130656727
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130656727
Ubiquitin system [BR:
hsy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
130656727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
Sina_ZnF
zf-C3HC4_3
zf-C3HC4_4
CTD11
Crescentin
Imm7
COG6_N
ABC_tran_CTD
Sec8_N
Motif
Other DBs
NCBI-GeneID:
130656727
NCBI-ProteinID:
XP_057315624
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All DBs
Position
9:22674151..22680314
Genome browser
AA seq
478 aa
AA seq
DB search
MSARLAREKASDNLINNLLPRVEFKDVPPISVYCCKCGNVLQRPLQLSCGHRCCTRCEKD
IPVNEAGQKHCPVDDELIEMKFPDISALTEIMFLLCYCVSKDEGCAWEGKLLDLEDHLKL
CDFSPNLPCPWSGVHCDFTGSKKQLEEHLKGSSTKHNSLFATFLSQIVESFDAGKHSMNE
LRNLSSKLRNRLDNASDNVKATQVALNETLNFLNQQGLKQADLRTWYADVDRRLTSLERD
GLPEMRQLEGRIKDLFEKVEKQQSMLKDATTGSKAPQLSSLLQTKKQVEEKTANLEKTGK
QHHSTLQDIDLKIRLFQSATFNGNYIWKLDNLKNRFAGALSGTIGELYTPPLYTSPFGYK
FSVKVLLYGDPKDRESGISSTPFISLYFVLMKGDYDEILSYPFKYPITITLENLSKKDNI
SHKIIPDEKIHFQQPFSEMNPAIGFSKFCSHEKLHSDGFIKDDAIYFKIVVDKPDDVP
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaagattggctcgagaaaaagcatcagataatttaatcaataacttgttacct
cgtgtggaatttaaagacgtaccaccaattagtgtatattgttgcaaatgtggtaatgtt
ttacagagaccgttgcaattgtcttgtggacatcgatgttgcacaagatgcgaaaaagat
attccggtgaacgaagctggtcaaaaacactgcccagtagacgatgagctaattgaaatg
aagtttccagatatttctgcattgactgagattatgttcttgctttgttactgcgtcagc
aaagacgagggttgtgcgtgggaaggaaagttattggatctcgaagatcatttaaaacta
tgtgatttcagtccaaatctaccttgtccatggagtggcgtacattgtgattttacagga
agcaagaaacagcttgaggaacatctaaaaggaagtagtacaaagcataacagtttattt
gcaacatttttatcacagatcgtagagtcgtttgatgcaggtaaacatagcatgaacgaa
ttgagaaacctgagttcaaaactgcggaatcgattagacaacgcatctgataacgttaaa
gcaacgcaggttgcgctaaatgaaacgttaaattttttgaatcagcagggcttgaagcaa
gccgatttacggacatggtatgcggatgttgatcggagattgacaagtttagaacgtgac
ggtttgccggaaatgcgacagttggaaggtcgtattaaagatttgtttgaaaaagtggaa
aagcaacagagtatgctaaaagatgcgaccactggtagtaaagctcctcaattgtcatcg
ttgctgcaaactaaaaaacaagtggaagagaaaacagcgaacttggaaaaaacaggcaag
caacatcattctacacttcaagatatcgatttgaaaattcgattatttcagtcagctacc
tttaatggtaattatatctggaaactagataacttaaagaatagattcgcaggagcattg
agtggcacgatcggagaattgtacactcctccgttatatacttcaccatttgggtataag
ttttctgtgaaagttttgttgtatggagatccaaaggaccgggaaagtggaataagttca
actccgtttatctcgttgtatttcgttctgatgaaaggggactacgacgaaatcctaagt
tacccgtttaaatatccaattacaattactttagaaaacctatctaagaaagataatatc
tcacacaaaatcataccggatgagaaaattcattttcagcaaccctttagtgaaatgaat
cccgccattggattctcgaagttttgcagccacgagaaacttcactcggatggatttatc
aaggatgatgcgatttattttaaaattgttgtcgacaaaccggatgatgttccataa
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