Hibiscus syriacus (Rose-of-Sharon): 120128951
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Entry
120128951 CDS
T09559
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120128951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120128951
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120128951
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
120128951
NCBI-ProteinID:
XP_039002484
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MGVPAFYRWLADRYPQSIADVIEEEPREDAKGNQIPVDVSKANPNGLEFDNLYLDMNGII
HPCFHPDGKPAPATYDDVFKSIFDYIDHLYSLVRPRKLMYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAAAEEERLREEFEAERKALSPMEKPETCDSNVITPGTPFMAVLSVALQYYIQ
SRLNRNPGWRTTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQEKCFLCGQVGHLAAECHGKQDNGNGEGNAVDDTPIHKK
KYQFLNIWVLREYLQYDLEIPNPPFEINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMQVYRKEFASIGGYLTDAGEVLLDRVECFIQSVSVYEDQIFQKRTRIQKAYENNEQ
MKLKARGEGSEEAQAPVVDKIKLGEPGYKERYYAEKFNVSNQGEIEEVKRDVVLKYLEGL
CWVCRYYYQGVCSWQWFYPYHYAPFASDLKDLTDLEITFFMGEPFKPFDQLMGTLPAASS
KALPEEYGKLMTEPSSPISSFYPFDFEIDMHGKRFAWQGVVKLPFINEWKLLAATRKLEA
TLTVEEHFRNSVMHDLLYVHPHHPLASQVISYYYQFSPHKKNEWPINANASGGMNGFLWL
TERNGWKSVVSSPVKELPHIEYNHVINVTYLNPSCHKHIPELPQGVVTPKKILTPLDIKP
FPVLWHEDNGGRRQQVRDRSWVPGAIIGPQLGEAAHRLVKNTLNIKSNGSSSGLFEQPSF
NISSNYTSIKQRPAGPSGYERGFFDDSSLSYSSRPLAAGSPGYGRGYGDGPNYYSQHNHL
HGIMASPRHTSSNGMQVNRDNFRAQERSHYQEHYNDLRTGMSAFSFEGSGRGRTQVEMSS
RMPNSGYTNAPPPVPPPTKWINMPENVNTGTYN
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttttacaggtggttagcggatcggtacccgcaatcgatcgcggat
gtgatcgaggaagaaccgagagaagacgctaagggaaatcaaataccagttgacgtctct
aaggctaaccctaacggcctcgaattcgataatctttatctcgatatgaacgggattatt
cacccttgttttcacccggatggcaagcctgcacctgccacttatgatgatgtttttaaa
tctatctttgactatattgaccatctttattcattggttcgtcctagaaagcttatgtat
atggcaattgatggcgttgcacctagagctaaaatgaatcaacaacgtactcggcgcttc
agagctgcaaaagatgctgccgaggctgcagctgaagaagagagattgagggaagagttt
gaggccgagaggaaagctttgtcccctatggaaaaacctgaaacatgtgactctaatgtt
ataactcctggcactccatttatggctgttttgtctgtagcacttcagtattacatacaa
tctaggttgaatcgtaatcctggctggcggactacaaaggttattctttctgattcaaac
gttcctggagagggagaacacaagatcatgtcatacatcaggttacaacgtaaccttcct
gggttcaatccaaacacacgacactgtttgtatggtctggatgctgatttgatcatgttg
tccttagccacccatgaggttcacttttcaattttaagagaggtgatcactcttcctggg
caacaagaaaaatgttttctatgtggtcaagttggtcatctggcagccgagtgtcatggc
aagcaagataatggaaatggagaagggaatgctgtggatgatacaccaattcacaagaag
aaatatcagtttcttaacatatgggtgttgcgagaatatctgcaatacgatttggagatc
cccaaccctccctttgagataaactttgaacgaattgtggatgattttgtttttttatgt
ttctttgttggtaatgacttccttccacatatgccaacattagaaatcagggagggtgct
ataaatctcctgatgcaagtatatagaaaggaatttgcttctataggtggttatcttact
gatgcgggtgaggttttgttagatagagtggaatgttttattcaatctgtttctgtttat
gaagatcaaatctttcagaagaggactcgtatacagaaggcatacgagaataatgagcaa
atgaagcttaaagcaagaggagaaggctctgaggaggcacaggcacctgttgtagataag
attaaattaggggaaccaggatacaaagaaagatattatgctgagaaattcaatgtatca
aaccaaggggagattgaagaagttaaaagagatgtcgttttgaagtatcttgaaggttta
tgttgggtgtgccgctattactaccaaggtgtttgctcttggcaatggttttatccatat
cattatgcgccatttgcttcagatcttaaggatcttactgacttggaaataacatttttc
atgggagaaccatttaagccatttgaccagctcatgggaactctgccagctgccagttct
aaagctttgccagaagaatacgggaaactgatgacggaaccatcatcacctatttctagt
ttctacccctttgattttgagattgatatgcatggtaaacgctttgcatggcagggtgtt
gtcaagttgcctttcatcaatgagtggaagttgcttgctgcaacaagaaagcttgaagct
actttaactgtagaagagcattttcggaacagtgtgatgcatgatctgctatatgttcat
cctcatcatcctttggcttcacaagttatttcatactactatcagttctcccctcacaaa
aaaaatgaatggccaattaacgcaaatgctagtggtggaatgaacggatttctttggtta
actgaaaggaatggttggaaaagtgtagtgtcttcccctgttaaggagttgccacacata
gaatataaccatgttataaacgttacttaccttaatccttcatgtcataaacacattcca
gaacttccacagggtgttgtgacacccaaaaagattctaacccctctagacattaaacct
tttcctgtattatggcatgaagataatggagggcggcgtcagcaagtcagagatcggtca
tgggtacctggagcgatcattggccctcaactaggagaggcagctcatcgtcttgtcaag
aacacacttaatatcaaatcaaatggctcatcgtctgggttgttcgagcaaccatcgttt
aacatctcgagcaactacacaagcattaaacaaagacctgctggaccatctggttatgaa
aggggcttttttgatgactcaagtctttcttatagtagtcgaccacttgcagctggatct
ccaggttatggaaggggatatggtgatggcccaaattattatagtcaacacaaccatcta
catggcataatggctagcccacgacatacctcatcaaatggtatgcaagtcaacagagac
aacttccgggcgcaggaaagatcacattatcaggaacattataatgatttgaggactgga
atgtctgctttctcatttgagggaagtggcagaggtagaacacaagtagagatgtcttca
aggatgccaaattctggatataccaatgctcctcctcccgttccccctcctaccaagtgg
atcaatatgccggagaacgtaaacactggaacttacaattaa
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