KEGG   Hibiscus syriacus (Rose-of-Sharon): 120198803
Entry
120198803         CDS       T09559                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120198803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsyr03021]
    120198803
Enzymes [BR:hsyr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     120198803
Transcription machinery [BR:hsyr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     120198803
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 120198803
NCBI-ProteinID: XP_039056002
LinkDB
Position
Unknown
AA seq 1481 aa
MSSLESDLYEEEENPNAFLTGIKFHVSTDADNENMSIMEIAAPGEVSDPRLGFPNFSNHC
ATCDATNMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDIWMKGANTVA
RLLGTMGCKYCVGNSIDWYPPMRFKITSKELFRKSAIMVEVSESSLMKVRKRGRQALPAD
YWDFIPKDQQQEEGFLRPLRRVLSHSQVRQLLMDVDPEFINKFISNADSIFLSFFPVTPN
SHRVTEIMHSSSNAQRLIFDERTRVYKKLVDFRGLANELGSHVLECLQISKLHVEKPSNE
DSSLISFLKKNKDSSSNMSGLRYMKDVILGKRNDHCFRMVLTGDPNLKLYEIGIPCHVAE
KLQIAEQLNNWNEERLKTCCNLRILEKGEIRIRRDGKLVRIRHDEKVQVGDTIYRPLNDG
DTVLINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSINTR
VELSELVSLNRQLINGQSGKNLLSLSHDSLTAAYLVKEDGVILNLFQLQQLEMFCPKHSP
LPAIVKAPQLSSSVWTGKQLFSMLFPPEFDYVFSPSDVVIHNGELICSSEGSTWLRDADG
NLFESLIKYYQGEVLGFLYAAQEVLCEWLSMRGLSVSLLDIYLSPDSNSQKNMMDEIFYG
LQEAEQTCNFKQLMVDSYHDLLAGNDEEINSFMAMDVERMCYEKQRSAALSQVSVDSFKQ
VFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHALVPLSFRFPYQLSC
AAWNNQKSHGLTQKVNDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNA
DLPGTLSRRLMFFMRDLCTSYDGTVRNAYGDQVVQFCYNIDKGISSPTSCADKLASQGKS
LPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSL
FLSGKLGRRKHGQEYGALEVKNHLERLIFKDIVSTCSIIFSPLMSSENRFSPWVCHFHVC
KDLVKKRRLTVHSIIDSLHMHCSNARRMWKIDLPDLQVTNKDCSFNDLQNKDDTFCITVT
IVECSKSSRIELDVIRDMVIPSLLEAVVKGFPEIKKVDILWNDEPRASNSHKTANGELYL
RVSVSGAFGITKLWGVLMDDCLQLMDVIDWTRSHPDNINQFCLAFGIDAGWRFFLKNMKS
AISDTGKTILDEHLYLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACF
VKAAKAEVLDDLQGTIDTLAWGKVPRIGTGGHFDIVYSMKDQKLEEPFDVYKLLRESVNS
KKQDIEFQVPKAFNSKSEKHSSPFVGAFCGSAFDELKKIETKTRSILRGLLTLNDVMKLS
RELRNILHKYPIDHRVSEAEWDTLMMALYFHPRRDEKIGCGAKEIKVVNHPEYPNTRCFS
LVRTDETFVDFSYRKCIVGALEVIAPKRAKSYKSRWLQSGS
NT seq 4446 nt   +upstreamnt  +downstreamnt
atgtcttccctggaaagcgacttgtatgaagaggaagaaaatccaaatgcctttctgact
ggcataaaatttcatgtctccacagatgctgataatgagaacatgtctatcatggaaatt
gctgcaccgggtgaggtgtctgatcctaggttggggtttccgaatttttctaatcactgt
gctacttgtgatgccacaaatatgaaacaatgtgaaggccatttcggggttattaaattt
ccatacacaatactccatcctttttttctttcagaagttgtacatatattaaataagatt
tgtccaggatgtaaatcgatccggaaagatatatggatgaagggtgctaatactgtagcc
agattacttggaaccatggggtgtaaatattgtgttgggaattcaatagactggtatcca
cccatgagattcaagataacgtcaaaagagctattcagaaaaagtgcaattatggtagag
gtgagtgaaagttctttaatgaaggtccgaaagagaggaaggcaagcattacctgcagat
tactgggattttattccaaaagatcaacaacaggaagaaggttttctgagaccacttaga
agagtcctatcacattcccaggttcgacagttgttgatggatgttgatccagagttcatt
aacaagtttatttcaaatgcggactctattttcctcagcttttttcctgtgacacctaat
agtcatcgagtgacagaaataatgcattcatcttccaatgcacagcgactgatctttgat
gaaagaaccagggtgtacaagaaactggttgattttagagggctagcaaatgaattgggc
tctcatgtattggaatgcctacaaatttctaagctgcatgtggagaagccatcaaatgaa
gattcttcgcttatttcttttctgaaaaagaataaagattctagttccaacatgtctggt
ttaagatatatgaaagatgttattctaggcaagagaaatgatcattgtttccgcatggtt
cttactggagacccgaaccttaaactgtatgaaattggcatcccatgtcatgttgccgag
aagttgcaaattgctgagcaactgaacaactggaatgaggagagactaaaaacttgttgt
aatttgcgtattcttgagaaaggtgagattcgcatcaggagagatggtaaattggttaga
attcgccatgatgaaaaggtccaagtgggcgacactatctataggccgctaaacgatggg
gatacggtgcttataaacagacctccttctatacatcaacactctctcattgctctatct
gttaaagttttacctgtcagttcagttgtgtcaataaaccctctaatttgttcccctttt
cgtggagattttgatggtgattgccttcatggctatgttcctcagtctatcaacacaagg
gttgagctcagcgagcttgtttctctgaatagacagctaatcaatggtcaaagtggtaaa
aatctgctctcactcagtcacgatagtttaacggctgcttatttggtcaaggaggatggg
gttatattgaatctattccagttgcaacagcttgaaatgttttgtcccaaacattcaccg
ttacctgcaattgtcaaagctcctcaattgagtagttctgtttggactggaaagcagtta
ttcagcatgctctttcctccagaatttgattatgttttttctccaagtgatgttgttatt
cataatggagagcttatatgttcatctgaagggtctacctggctacgagatgctgatggc
aacctctttgaaagtcttattaaatactatcaaggagaggtccttggctttttgtatgct
gcccaggaagttctttgtgagtggttgtcaatgaggggtttgagtgtttcgctcttagac
atatatctatctcctgactcaaattcacaaaagaacatgatggatgaaatcttttatggt
ctgcaagaggcagagcagacttgcaactttaagcagttgatggttgattcttatcatgat
ctccttgctggaaatgatgaagaaattaatagttttatggctatggatgttgagcggatg
tgttatgagaagcaaagatcggctgcacttagccaagtttctgttgattcttttaagcaa
gtttttcgtgatattcagaatttgctctacaagtatgcaaataaagacaattcgctattc
accatgttcaaagcagggagcaagggtaacttgctgaagttagtacaacatagcatgtgc
cttggactgcaacatgcacttgtacctttatcattcagatttccttatcagctttcatgt
gcagcatggaataaccaaaagtctcacggcttaacccagaaagtgaatgatactgatgag
tctgctaagaaatatatcccctatgctgtggttgagagttcttttgtgaagggtctgaac
ccactagaatgttttgttcattcagtgactactcgagacacatctttcagtgacaatgct
gaccttcctgggacgctttcacgacggttgatgttcttcatgcgtgatctatgcacatcg
tatgatggaactgtgaggaatgcatatggagaccaggttgttcagttctgttataatatt
gataagggtatatctagtccaactagttgtgctgacaaattagcaagtcagggcaagagt
cttcctgatgggataggtggccaacctgttggttcattgtctgcctgtgctatttctgag
gctgcatatagcgcattggaccagccaattagtctacttgaatcttcaccattgctgaac
ttgaagagggttcttgagtgtggttctaaacgaagcaatgctgaccagactatgtcacta
tttttatctggtaaacttggaaggagaaagcatggtcaggagtatggagccttagaagtc
aagaatcatttggagaggttgatatttaaagatattgtgtctacttgctcaataattttc
tctccactgatgtctagtgaaaaccgttttagtccttgggtttgccattttcatgtgtgc
aaggatcttgtgaaaaagaggaggcttactgtgcattctattattgattctcttcacatg
cactgttccaatgccagaagaatgtggaaaatcgatttgcctgacttgcaagttacaaac
aaggattgttcttttaatgacttgcaaaataaagatgatacattttgtatcactgtcaca
atagttgaatgctctaaaagttctcgcatagaattggacgtgattcgagacatggtgata
ccttcccttctggaagcagtggtaaaaggatttccggagatcaagaaggtggatatttta
tggaacgatgaaccgagagcctcaaattctcataaaactgctaatggtgaactttacttg
agggtttctgtatctggtgcttttggtataacaaaactctggggtgtgcttatggatgat
tgcctccaattgatggatgtgattgattggacacgaagtcatccagataacataaatcag
ttttgtttggcatttggaatagatgctggatggagattttttctcaaaaatatgaagagt
gcaatatcagatactggcaagactatactagacgaacatttgtaccttgccgccaattgt
ctgtcagctactggggagtttgttggcttgaattcaaaaggcttgaaacaacaaagagaa
cacgcatttgtctcttcccccttcatgcaagcatgcttttcgaatcctagtgcttgcttt
gtcaaagctgctaaggccgaagttttggatgatcttcaggggaccattgacacactggct
tggggaaaggtccctcgtattgggactggtggacattttgatatagtatattctatgaag
gatcaaaagcttgaagaaccatttgacgtgtataagctgctgcgagaatctgtgaattcc
aagaagcaggatatagagtttcaagtacccaaagcttttaactctaagtccgagaaacat
agttctccgtttgtgggagctttctgtggttctgcctttgatgagctgaagaagattgaa
acaaaaacaagatcaatcttgagaggacttttaaccttgaatgacgtcatgaagctttcg
cgcgagttaaggaatattttgcacaagtatcctattgatcaccgggtaagcgaggccgag
tgggataccttgatgatggcattgtactttcaccctcgaagagacgagaagattggatgt
ggagctaaggaaataaaggtagtaaaccatcccgaatatccaaatactcgctgcttctca
ttggtaagaacggacgagacgtttgtagacttctcgtataggaagtgtattgttggggct
ctggaggtgattgcgcctaaaagggcaaaatcctacaagtcaagatggttacaatctggt
agttag

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