Hymenobacter tibetensis: MTX78_10455
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Entry
MTX78_10455 CDS
T08236
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
htb
Hymenobacter tibetensis
Pathway
htb03030
DNA replication
htb03410
Base excision repair
htb03420
Nucleotide excision repair
htb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
htb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTX78_10455 (ligA)
03410 Base excision repair
MTX78_10455 (ligA)
03420 Nucleotide excision repair
MTX78_10455 (ligA)
03430 Mismatch repair
MTX78_10455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
htb03032
]
MTX78_10455 (ligA)
03400 DNA repair and recombination proteins [BR:
htb03400
]
MTX78_10455 (ligA)
Enzymes [BR:
htb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MTX78_10455 (ligA)
DNA replication proteins [BR:
htb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTX78_10455 (ligA)
DNA repair and recombination proteins [BR:
htb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MTX78_10455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTX78_10455 (ligA)
MMR (mismatch excision repair)
DNA ligase
MTX78_10455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MTX78_10455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UOG77002
LinkDB
All DBs
Position
complement(2623915..2626086)
Genome browser
AA seq
723 aa
AA seq
DB search
MTTDIEQQITALTERLHHLNYQYYQRDVSEVSDQEFDQMLAELQRLEKEYPQFAQPNSPT
QRVGGTITKQFPTALHKYPMLSLGNTYSEADLREFDERVRRGLEGAEFAYVCELKFDGVA
MSLTYENGQLTQGVTRGDGTRGDVVTNNVRTIKNLPLHLRQAPDIKHPTEMEVRGEIFMP
LTVFAELNAEREANGEALLANPRNAASGALKLQDSALVAERRLRFYAYSFLMPGRSIFPT
HSASLEAMQTWGLPVSDTWRLCHSITEVLDFVHEWDKKRFTLPVATDGIVIKVDDFRQQE
LLGYTSKSPRWAIAYKYPAEAGRTRLREIQYQVGRTGAVTPVALLDPVPLAGTVVKRASV
HNANQIAALDLRLNDMVFVEKGGEIIPKITGVDLSARLPESQPIVYPTTCPACNTPLIRP
AGEAHFRCPNDRGCPPQLKAKLEHYVSRKALDIDGLGAETVGRFFDLGLVADAATLYDLP
AKAGEIAQLERMGEKSVQRLVAGLEQSKQVPFERVLFGLGIRYVGETVAEKLAAHYRTVE
ALEQATATELAAVPEVGGVIAESVAAWFQEPTNRDLVERLRTAGVQLALTGEAPQAASNR
LEGLTFVLSGVFEQHSRDELQALIQAHGGKVTGSISKKLSYLVAGDKMGPAKREKATELK
VPIISETDLLAMLPSETEAETDPLDVLSGPAADVQDLGIPPVSAGSASFPDKSSGTGQQG
SLF
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgacatcgagcagcaaattaccgccctcacggagcgcctgcaccacctcaac
taccagtattatcagcgcgacgtttccgaggtatccgaccaggagttcgaccagatgctg
gccgaactgcaacgcttagagaaagagtatccgcagtttgcgcagcccaattcacctacc
caacgagtgggcggcaccatcaccaagcagttccctaccgcgctgcacaagtaccccatg
ctcagcctcggcaacacctactcggaagcagacctgcgcgagttcgatgagcgagtacgc
cggggcctggagggcgcagagtttgcttacgtttgcgagctgaagttcgacggcgtggcc
atgagtttgacctacgaaaacggccaactcactcaaggcgttacgcgcggcgacggtacc
cgcggcgacgtggtaaccaacaacgtgcgcaccattaaaaacctgccgctgcacctacgc
caagcccctgacatcaagcatccgaccgaaatggaagtgcgcggcgagatatttatgccc
ctcacggtgtttgcggagcttaacgccgaacgcgaagccaacggcgaggccttgctagcc
aacccgcgcaacgcggccagtggcgcgctcaagcttcaggattcagctttagtggcggag
cggcggctacgcttctacgcgtattcgtttctgatgcccggccgcagcatcttcccgacc
cacagcgcgtcgttggaagccatgcaaacctgggggctgcccgtttccgatacctggcgc
ttgtgccacagcatcacggaggtgctggattttgtgcacgagtgggacaaaaaacgcttc
acgttgccggttgccaccgatggcatcgtaatcaaagtagatgatttccggcaacaggag
ctgttgggctatacctctaagagtccacgctgggctattgcctataagtacccggcagag
gcgggccggacgcggctgcgggaaattcaataccaagtgggccgcaccggggccgttacg
ccggtggccctgctcgacccagtgccgctggctggcactgtggtgaagcgggcgtcggtg
cacaacgccaaccaaatagccgccctcgacctacgcctcaacgatatggtgttcgtggag
aaaggcggggaaattattccgaagattacgggcgtggacctctcggctcggctccccgaa
agccagcctattgtgtaccctacaacctgcccggcctgcaacacgcccctgattcggcca
gctggggaggcgcacttccgctgtcccaacgaccgaggctgcccgccccagctgaaagcc
aagctcgaacactacgtgtctcgcaaagccctcgacattgatggcttaggcgctgaaacg
gtgggccgtttcttcgacttgggcttggtagcggatgcggctactttatatgacctgcca
gccaaagccggcgaaatagctcagctggaacgcatgggcgagaaatcggtgcagcggctg
gtagcaggtcttgagcaaagcaaacaggtgcctttcgagcgggtgctgtttgggttgggc
atccgctacgtgggtgaaaccgtggccgagaagctggctgctcattaccgcacagtggaa
gctctagagcaagccacggccaccgagctggcggctgtgcccgaagtaggcggcgtgatt
gccgaatcagtggccgcgtggtttcaggagcctactaaccgcgacctggtggaacgactc
cggacagcgggtgtgcaactggcgcttaccggagaagctcctcaggcagcgagcaaccgg
ctagaaggcttgacctttgtgctttctggcgtgttcgagcagcacagccgcgacgaactg
caagccctgattcaggcgcacgggggcaaggtgacgggtagcatcagcaagaagctcagc
tatctggtggccggcgacaaaatgggcccggctaagcgtgagaaggccactgagttgaaa
gtgcccatcatctcggaaaccgatttgctagccatgctcccgtctgaaacggaagctgaa
actgaccctttggacgtgctgtctgggcccgcggcggacgtacaagatttggggattcct
ccggtttcggcgggttctgcctcatttccagataaaagcagtggcacaggtcagcaaggt
tctctattttag
DBGET
integrated database retrieval system
