Hydrogenophaga taeniospiralis: KI616_12755
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Entry
KI616_12755 CDS
T08018
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
htn
Hydrogenophaga taeniospiralis
Pathway
htn03030
DNA replication
htn03410
Base excision repair
htn03420
Nucleotide excision repair
htn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI616_12755 (ligA)
03410 Base excision repair
KI616_12755 (ligA)
03420 Nucleotide excision repair
KI616_12755 (ligA)
03430 Mismatch repair
KI616_12755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
htn03032
]
KI616_12755 (ligA)
03400 DNA repair and recombination proteins [BR:
htn03400
]
KI616_12755 (ligA)
Enzymes [BR:
htn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KI616_12755 (ligA)
DNA replication proteins [BR:
htn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KI616_12755 (ligA)
DNA repair and recombination proteins [BR:
htn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KI616_12755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI616_12755 (ligA)
MMR (mismatch excision repair)
DNA ligase
KI616_12755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KI616_12755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UCU96638
LinkDB
All DBs
Position
2580914..2583046
Genome browser
AA seq
710 aa
AA seq
DB search
MCPIDLFSSEPAPAERAAELREQLNHHAHLYYTLDAPEIPDAEYDRLFRELQALEATHPE
LLTPDSPTQRVGGRVLDAFTPVRHAVPMLSINTETDTEPSGARNFDARVRRALGLTEADA
PVDYVAELKFDGLAMSLRYENGVLVQAATRGDGEVGEDVTNNIRTVRQIPLSIVPVSAGS
EDDSRVKAVLALDNNPSVLEVRGEVYMRRDDFDALNEKQRAKIAAGAKGEKTFVNPRNAA
AGAVRQLDSGIAAQRPLSFFAYGVGEITPPEQGGPAFETHFELLMQLKAWGFPVAEQTTV
ATGADELVAFHQRIGASRDQLPYDIDGVVYKVNSLVLQRRLGFVTREPRWAVAHKYPAQE
QLTTVLAIDVQVGRTGKLTPVAKLAPVFVGNVTVTNATLHNEDEARRKDVRVGDTVIVRR
AGDVIPEVVAVLPEKRPEGAEVFTMPRQCPVCGSDAVREEGEVDYRCTGGLFCGAQRKEA
ILHFAHRRAVEVEGLGDKLVEQLVDSGVVKTLPDLYRLGFTALASLDRMADKSAQNIVAA
LEKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGQIDRIMDATVEQLLEVNDVGPVVAQS
IRTFFDQPHNREVVEQLRACGVTWEEGEPAAQAPRPLAGKTFVLTGTFPSLSRDAAKDLL
EAAGAKVAGSVSKKTDYVVAGAEAGSKLEKAQSLGVAVIDEASMLALLQA
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtgccctattgatcttttttcctctgagcccgcgccggccgaacgcgcggccgagttg
cgcgagcaactgaaccaccacgcccacctgtactacacgctggatgcgcccgagattccg
gatgccgagtacgaccggctgtttcgcgagctgcaggcgctcgaagccacacacccggag
ctgttgacgccggattcgccgacccagcgtgtcggtggtcgggtgctggatgccttcacg
ccagtgcgccacgccgtgcccatgctgtcgatcaacaccgagaccgacaccgaacccagc
ggtgcgcgcaatttcgacgcccgcgtgcgtcgcgcgctggggctgaccgaggccgacgct
cccgtcgactacgtggccgagctcaagttcgacggcctggccatgagcctgcgctatgaa
aacggcgtgctggtgcaggccgccacgcggggtgacggtgaggtgggcgaggacgtgacg
aacaacatccgcacagtgcgacaaatcccactcagcatcgtgccggtttccgcaggaagc
gaggacgactcaagggttaaggcggtacttgctctggacaacaatccgtcggtgcttgag
gtgcgcggcgaggtctacatgcgccgcgatgattttgatgcactcaatgagaagcagcgc
gccaagatcgccgccggtgccaagggcgaaaagaccttcgtgaacccgcgcaacgccgcg
gccggcgcggtgcgccagctcgattcgggcattgccgcccagcgcccgctgagcttcttc
gcttacggcgtgggcgagatcacaccgccagagcagggaggcccggcgttcgagacacac
tttgagctgctcatgcaactcaaggcctggggcttcccggtggccgagcagaccacggtg
gccacgggggccgacgagctggtcgcgttccaccagcgcatcggcgccagccgcgaccag
ctgccctacgacatcgacggcgtggtctacaaggtgaattcgctcgtgctgcagcgccgg
ctcggttttgtcacgcgcgagccgcgctgggcggtcgcgcacaaatacccagcgcaggag
cagctcaccaccgtgcttgccatcgacgtgcaggtggggcgcaccggcaagctcacgccc
gtggccaagctcgcgccggtgttcgtgggcaacgtgacggtgaccaacgccaccctgcac
aacgaagacgaggcgcgccgcaaggacgtgcgcgtgggcgacacggtgatcgtgcgccgt
gcgggcgacgtgatccccgaggtggtggccgtgctgcccgagaagcggcccgaaggcgcc
gaggtgttcaccatgccgcgccagtgcccggtgtgcggcagcgatgccgtgcgcgaagag
ggcgaagtcgactaccgctgcaccggtggcctgttctgcggcgcccagcgcaaggaggcg
atcctgcatttcgcccaccgccgagcggtcgaagtcgagggcctgggcgacaagctggtg
gaacagctggtggactcgggcgtggtcaagaccctgcccgacctgtaccgcctgggcttc
accgcgctggccagcctggaccgcatggccgacaagtcggcgcagaacatcgtggccgcg
ctggagaaatccaagcagaccaccttgccgcgtttcctgttcggcctgggcatccgccat
gtgggcgaggctacggccaaagatctggcgcgccacttcggccagatcgaccgcatcatg
gacgccacggtcgagcagttgctggaggtgaacgacgtgggtccggtggtggcgcaaagc
atccggaccttctttgaccagccgcacaaccgcgaggtggtggagcagctgcgtgcctgt
ggcgtcacctgggaagagggcgagcccgcggcgcaggcgcccagaccgctggcgggcaag
actttcgtgctgaccggcacctttccctcgctcagccgcgacgcggccaaggatctgctg
gaagccgcgggcgccaaggtggccggctcggtgagcaagaagaccgactacgtggtggcg
ggcgcagaagccggcagcaagctggagaaggcgcagtcgctgggtgtcgccgtgatcgac
gaggcgtccatgctggccttgttgcaggcttga
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