Hypericibacter terrae: FRZ44_11160
Help
Entry
FRZ44_11160 CDS
T06396
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
htq
Hypericibacter terrae
Pathway
htq03030
DNA replication
htq03410
Base excision repair
htq03420
Nucleotide excision repair
htq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
htq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRZ44_11160 (ligA)
03410 Base excision repair
FRZ44_11160 (ligA)
03420 Nucleotide excision repair
FRZ44_11160 (ligA)
03430 Mismatch repair
FRZ44_11160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
htq03032
]
FRZ44_11160 (ligA)
03400 DNA repair and recombination proteins [BR:
htq03400
]
FRZ44_11160 (ligA)
Enzymes [BR:
htq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRZ44_11160 (ligA)
DNA replication proteins [BR:
htq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRZ44_11160 (ligA)
DNA repair and recombination proteins [BR:
htq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRZ44_11160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRZ44_11160 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRZ44_11160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRZ44_11160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEX15829
UniProt:
A0A5J6MEN7
LinkDB
All DBs
Position
complement(1198930..1201101)
Genome browser
AA seq
723 aa
AA seq
DB search
MTKKPAATIAALRVDELTEAQAEKELARLAAEIAHHDKLYHQKDAPEISDAAYDALVNRN
KAIEARFPGLKRLDSPSARVGAAPASGFAKVTHSRPMLSLDNGFSTEDVTDFLGRIRRFL
KLPDDSDIEMVAEPKIDGLSAALTYENGRFVQGATRGDGSVGEDITRNLATIADLPKQLH
GRHQGKLIEVRGEVYMRHADFRQLNKTREADGEAVFANPRNAAAGSVRQLDPAITASRPL
RFFAYAEGETSGAIDDCKTHWDFLERLKEWGFTVNPLVKRCEDEKALLAFYEKIGAQRAK
LDYDIDGVVYKVDRRDWQQRLGFVGRAPRWALAHKFPAERAETRLNAITIQVGRTGALTP
VAELEPITVGGVVVSRATLHNEDEIERKDIREGDWVVVQRAGDVIPQIVEVIKKRRPRDS
KAYKFPTKCPVCHSLAIREIDEAVRRCTGGLICPAQAVERLRHFVSRGAADIEGLGEKHI
QAFWDEGWLKTPGDIYRLTNHRDELVAREGWGEQSVKKLLDAIEARRRLPLDRFIYALGI
RQVGEQTAKLLARHYETLAAWRDAMIEASQGLKQAMKQSTEDLPLDVWRLAGSLSPAIGD
LDAIEGIGPSVANDIVDFFAEPHNREVLKDLEREIEVPPFKAPKIGNSPVAGKTVVFTGT
LETMGRNEAKAKAESLGAKVAGSVSSKTDYVIVGADAGSKAKKAAELGVKTLSEQDWIKL
IGG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaaacccgccgcgacgatcgcggccctccgcgtcgacgagctgaccgaggcg
caggccgagaaggagctggcgcggttggcggccgagatcgcccatcacgacaagctctac
catcagaaggacgcgcccgagatctcggacgccgcctatgacgcgctcgtcaaccgcaac
aaggcgatcgaagcgcgctttcccggcctcaaacgcctcgacagcccttccgcgcgcgtc
ggcgcggcgccggccagcggattcgccaaggtcacgcacagccggccgatgctctcgctc
gacaacggcttcagcacggaagacgtcaccgatttcctcggccgcatccgccgcttcctc
aagctgccggacgacagcgatatcgagatggtggccgagcccaagatcgacgggctttcc
gcggccctcacctacgagaacggccgtttcgtccagggcgccacgcgcggcgacggcagc
gtgggcgaggacatcacccgcaacctcgccaccatcgccgatctgcccaagcagcttcac
ggccgccatcagggcaagctcatcgaggtgcgcggcgaagtctatatgcgccacgccgat
ttccggcagctcaacaagacgcgcgaggccgacggcgaagcggtcttcgccaatccgcgc
aacgccgccgccggcagcgtgcgccagctcgatcccgccatcaccgcgagccgccccttg
cgcttcttcgcctatgccgagggggagaccagcggcgccatcgacgattgcaagacccac
tgggatttcctcgagcgcctcaaggaatggggcttcaccgtcaatccgctggtcaagcgc
tgcgaggacgagaaggcgctgctggccttctacgagaagatcggcgcgcagcgcgccaag
ctcgattacgacatcgacggcgtcgtctacaaggtggaccgccgcgactggcagcagcgg
ctgggcttcgtcggccgcgccccgcgctgggcgctggcgcacaagttccccgccgagcgg
gcggagacgcggctcaacgccatcaccatccaggtcggccgcaccggcgcgctgacaccg
gtggccgagctcgagccgatcacggtcggcggcgtggtggtgtcgcgcgcgaccttgcat
aacgaggacgagatcgagcgcaaggatatccgcgaaggcgactgggtcgtggtgcagcgc
gccggcgacgtgatcccgcagatcgtcgaggtgatcaagaagcgccgcccgcgcgattcc
aaagcctataagtttcccaccaagtgccccgtctgccacagcctcgcgatccgcgaaatc
gacgaggcggtgcggcgctgcaccggcgggctgatctgcccggcccaggcggtcgagcgg
ctgcgccatttcgtgagccgcggggctgccgatatcgaggggctcggcgagaagcatatc
caggccttctgggacgaaggctggctcaagacgccgggcgacatctatcgcctgacgaat
caccgcgacgagctggtcgcgcgcgaaggctggggcgagcagtcggtcaagaagctcctg
gatgcgatcgaggcgcgccgccggttgccgctcgaccgcttcatctatgcgctcggcatc
cgccaggtgggcgagcagaccgccaagctgctggcgcgccactacgagacgctggccgcc
tggcgcgacgcgatgatcgaggcgagccagggcctgaaacaggcgatgaagcaatcgacc
gaggatctgcctctcgatgtctggcgcctcgccggcagcctcagccccgccatcggcgat
ctcgacgcgatcgaaggcatcggcccttcagtcgccaacgacatcgtcgatttcttcgcc
gaaccgcataaccgcgaggtgctgaaggatctggagcgggagatcgaggtcccgcccttc
aaggcacccaagatcggcaactcgcccgtcgccggcaagaccgtggtcttcaccggcacg
ctcgagaccatgggccgcaacgaggccaaggccaaggccgaatccctcggcgccaaggtc
gcgggctcggtctccagcaagaccgactatgtgatcgtcggcgccgacgccggctccaag
gccaagaaggccgccgagctcggcgtgaagacgctgagcgagcaggactggatcaagctc
atcggcgggtga
DBGET
integrated database retrieval system
