Hydrogenovibrio thermophilus: EPV75_06850
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Entry
EPV75_06850 CDS
T05808
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
htr
Hydrogenovibrio thermophilus
Pathway
htr03030
DNA replication
htr03410
Base excision repair
htr03420
Nucleotide excision repair
htr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
htr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EPV75_06850 (ligA)
03410 Base excision repair
EPV75_06850 (ligA)
03420 Nucleotide excision repair
EPV75_06850 (ligA)
03430 Mismatch repair
EPV75_06850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
htr03032
]
EPV75_06850 (ligA)
03400 DNA repair and recombination proteins [BR:
htr03400
]
EPV75_06850 (ligA)
Enzymes [BR:
htr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EPV75_06850 (ligA)
DNA replication proteins [BR:
htr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EPV75_06850 (ligA)
DNA repair and recombination proteins [BR:
htr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EPV75_06850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EPV75_06850 (ligA)
MMR (mismatch excision repair)
DNA ligase
EPV75_06850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EPV75_06850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
QAB15399
UniProt:
A0A410H393
LinkDB
All DBs
Position
complement(1461918..1463936)
Genome browser
AA seq
672 aa
AA seq
DB search
MSERQHYLDLVETLNKHSYQYYVLDDPLISDPQYDVMYQELLTLEAEHPDWVVKESPSQR
VGDQPLTEFKTVRHALAMYSLDNAFNDEDLAAFLKRIQEKEPGLAEIDFSAEPKMDGLAI
NIRYENGELVQATTRGDGQVGEDVTHNVRTIQAIPLKLFGQAWPEVVEVRGEVFMSKPAF
EKLNAYQQSIDGKVFANPRNAAAGSLRQLDAKIVAKRQLSFYLYGWGEISDDWPVPERYS
DMIEQLVAWGLPSNPNSEVVRNLDGMLGYYEKILGLRDELPYEIDGIVYKVNRIALQAHL
GFTARAPRWAIARKFPAQEVWTKLLGIEVQVGRTGAITPVARLEPVSVGGVTVSNATLHN
MDEIRRKDVRIGDTVIVRRAGDVIPEVVGPVLAQRPDDTRLFEMPSHCPECGSDVVKEID
KAVYRCTGGLVCPAQRKRSLYHFVSRKAMDIQGLGDKLIDQLVDIGWVKHPDDFYHLTVE
QLATLERMAEKSAQNVVDGIQASRETTLAKFIYSLGIPEVGEVTARNLANYFKDLPSIQQ
ATLEEFIEVDDVGEVVAEHLVNFFKEPHNEEVIQGLLDAGMHWPAPKAADVPVDSPFDGK
VVVLTGTLTEMSRPEAKDWLESLGAKVTGSVSAKTDYVVAGEKAGSKLTKAESLGVAVLD
ESEWLAMMPPRV
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacgccaacactacctcgacctggttgaaaccctcaataagcatagctatcag
tattacgttctcgatgatccgttgatcagcgacccgcaatacgatgtgatgtatcaagaa
ctcttgacgctcgaagcggaacatccggattgggtggtcaaggagtcgcccagtcagcgg
gtgggtgatcagccgctcaccgaattcaaaaccgtccgccacgcgttggccatgtattcc
ctggacaatgcctttaacgatgaagacctggcggcgtttttgaaacgcattcaggaaaaa
gagccaggcctggcggaaatcgacttttccgccgagccgaaaatggacggtctcgccatc
aatattcgttatgaaaacggtgaactggtgcaagccaccacccgtggcgacggccaggtc
ggggaggacgtcacccataatgtgcgcaccattcaagccattccgttgaaacttttcggc
caagcctggccggaagtggtggaagtgcgcggcgaagtgttcatgtccaaaccggcgttt
gagaaactgaacgcctatcagcaatccattgacggcaaagtgtttgccaaccctcgaaac
gccgccgcgggctccttacgacaactggatgccaaaatcgtcgccaaacgtcagttgagt
ttctacctctatggctggggtgaaatcagcgatgactggccggtaccggaacgttattcg
gacatgattgagcaactggtggcgtggggcttgccatccaacccgaattccgaagtggtt
cgcaacctggacggaatgttgggttactatgaaaaaatattgggcttgcgcgacgaattg
ccttatgaaatcgatggcattgtctataaagtcaaccgtattgccttgcaagcacacctt
gggttcaccgctcgcgcgcctcgttgggccatcgcgcgcaaattcccggcgcaggaagtc
tggaccaagctcctgggtattgaagtgcaggttgggcgtacaggcgccattacgccggta
gcgcgtctggaaccggtttccgtcggcggtgtgaccgtttccaatgccacattgcataat
atggatgaaattcgccgtaaggatgtccgcatcggtgataccgtcatcgtgcgccgtgcc
ggtgatgtgattcccgaagtggtgggaccggtgttggcacaacgtccggacgacacccgt
ttgtttgaaatgccgagccattgtccggaatgcggttccgatgtggtcaaggaaatcgat
aaagcggtttaccgttgcacgggtggattggtttgcccggcacaacgcaaacgttcgctg
tatcattttgtgtcgcgtaaagccatggatattcagggcttgggtgataaactgattgac
cagctggtcgatatcggttgggtcaaacatccggacgatttttatcatctgacggtcgag
caattggcgacgttggaacgcatggcggaaaaatcggcacagaatgtggtggacggcatt
caagcgtctcgcgaaaccaccttggccaagttcatttacagcttggggattccggaagtc
ggtgaagtcacggcgcggaatttggcgaattatttcaaagacttgcccagtattcagcag
gccacgcttgaagaatttattgaggtggatgacgtcggtgaagttgtcgccgaacacctg
gtgaactttttcaaggaaccgcataatgaagaagtgattcaaggtttgctggatgccggc
atgcattggccggcaccgaaagccgccgacgtaccggttgattcgccgtttgatggaaag
gtggtggtgttgaccggcactttgaccgaaatgagccgcccggaagccaaagactggctg
gaatcgctgggtgctaaagtcaccggcagcgtgtccgccaaaactgattatgtcgtggcc
ggcgagaaggccggctcgaaattgaccaaagccgaatcgctgggcgtggcggtgctggac
gagtccgaatggctggcaatgatgccgccgcgcgtttaa
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