Helicobacter typhlonius: BN2458_PEG1082
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Entry
BN2458_PEG1082 CDS
T04174
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hty
Helicobacter typhlonius
Pathway
hty03030
DNA replication
hty03410
Base excision repair
hty03420
Nucleotide excision repair
hty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN2458_PEG1082
03410 Base excision repair
BN2458_PEG1082
03420 Nucleotide excision repair
BN2458_PEG1082
03430 Mismatch repair
BN2458_PEG1082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hty03032
]
BN2458_PEG1082
03400 DNA repair and recombination proteins [BR:
hty03400
]
BN2458_PEG1082
Enzymes [BR:
hty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN2458_PEG1082
DNA replication proteins [BR:
hty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN2458_PEG1082
DNA repair and recombination proteins [BR:
hty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN2458_PEG1082
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN2458_PEG1082
MMR (mismatch excision repair)
DNA ligase
BN2458_PEG1082
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN2458_PEG1082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
SeqA_N
Zn_ribbon_DUF2089
Motif
Other DBs
NCBI-ProteinID:
CUU39967
UniProt:
A0A0S4PUF8
LinkDB
All DBs
Position
I:complement(965977..967941)
Genome browser
AA seq
654 aa
AA seq
DB search
MDIVTTKDEYKSQVQILKKMAYHYYVLDEPIATDEQYDTLYHKVLEFEKTNPALMDPSSP
TQRVGDTPLESFSKNTHLVRMWSLDDMFNDEDLSAWIQRIYKSRAQATFTCSPKFDGASL
NLLYRGGKLISATTRGNGIEGELVTQNARTIQSVPLEIAFKDDIEVRGEVIITKDDFEAI
NNERLEQNLSLFANPRNAAAGSLRQLDSKITAKRKLRFMPWGIGAGLEKFSSFYAALQEI
GNFGFAPVPFLRHCKNMEEITTLYRELVSKRNNYPIMLDGMVIMLDEIALQQELGWTIKS
PRFACAYKFPAVEKSSKILSVTLQVGRTGLITPVAELKPVEIEGAMISRATLHNFSEIER
KDIRLGDEVIIIRSGDVIPKIIKPLTALRDGSQKPITKPTHCPVCGEELLIEEIFIKCQN
LSCEARVIESIIHFASKKALNIDGLGEKIVIQLYENAMIRSIKDIYSLTLEQLLKLEGWK
EKRAQNLIDSIRDTIGVELWRFINALGIEHIGEGASKKLAQHFGLDTFKLELDSILSLDG
FGEEMARSLVEFNVANKALIEELISIITPCVEIITYDKNHTFYNKTIVLTGTLSSPRDEI
SALLESKGAKIASSVSKKTDFVIYGDKAGSKLEKAQSLGVKTLNEQEFLALIKF
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
gtggatattgttacaacaaaagatgagtataaaagccaagtgcagattctcaaaaaaatg
gcataccattattatgtgcttgatgagccaattgccactgacgaacaatatgacacactc
tatcacaaggtgctagagtttgaaaagactaatcccgctcttatggaccccagctccccc
acacagcgcgtaggcgatacacctttagaatcttttagcaaaaatacgcatttggtgcgt
atgtggagtttagatgatatgtttaatgatgaggatttgagtgcgtggattcaaagaatc
tataaaagccgagcccaagcgacttttacttgctctcctaaatttgatggggcaagtctt
aacctcctttatcgtggtggaaaactcataagtgccactacaagaggaaatggcatagaa
ggggagcttgtaacacaaaatgcgaggacgattcaaagtgtgccgcttgagattgcattt
aaagatgacattgaggtgcgcggggaagttatcatcacaaaagatgattttgaggcgata
aataacgagcgattagaacagaatcttagcctttttgcaaacccacgcaatgccgcagca
ggaagcttaagacagctagattctaaaatcacagccaaacgcaaactgcgctttatgcct
tggggtattggcgcggggcttgagaaattttctagtttctatgcggcattacaggagata
gggaatttcggctttgcacctgtgccttttttgcgccattgcaagaatatggaggagatt
acaacattgtatcgtgagcttgtttcaaaacgcaataattatcccataatgcttgatggt
atggtgattatgcttgatgagattgccttgcagcaggagcttggctggacgataaaatca
cctcgttttgcttgtgcgtataaatttcccgcagtggagaaaagctctaagattctatct
gtaactttacaagtaggacgcacaggacttatcacgcctgtggcggagcttaagcccgtg
gagattgagggagcgatgatttcgcgcgcaactttacacaactttagtgaaattgagcgc
aaagacattcgtttaggcgatgaagtgattattatccgcagtggcgatgtgatacctaaa
atcataaagccccttaccgcattgcgtgatggctcacaaaagcccattactaaacctaca
cattgccctgtgtgtggcgaggaattgttgattgaggagattttcatcaaatgccaaaat
cttagctgtgaagctagggtgatagaatctattattcactttgcctctaaaaaggcactt
aatattgacggattgggtgaaaaaatcgttatccaactctacgaaaatgcgatgatacga
agcattaaggatatttatagtttaactttggagcaactccttaaacttgaaggctggaaa
gaaaaacgcgctcaaaatcttatagattctatacgagataccataggcgtggagctatgg
cgttttatcaatgcgcttggaatcgagcatatcggcgagggtgcgagtaagaaactcgct
caacattttgggctagatacttttaaactagagttagattctatactctcactagatggt
tttggcgaggaaatggcacgctcacttgtagagtttaatgtcgcaaataaggcacttata
gaggagttaatatctatcatcactccttgcgtggagattatcacatatgacaaaaatcat
actttttacaataaaacgattgtgcttacaggcacgctttctagccctagagatgagata
agcgcacttttagaatctaagggtgcaaaaattgcctcaagcgtgagtaaaaagacggat
tttgtgatttatggagacaaggcggggagcaaattggaaaaagcacaatctctaggtgta
aaaacgctcaatgagcaggagtttctcgcacttataaagttttaa
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