Halorhabdus utahensis: Huta_2628
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Entry
Huta_2628 CDS
T00971
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hut
Halorhabdus utahensis
Pathway
hut03030
DNA replication
hut03410
Base excision repair
hut03420
Nucleotide excision repair
hut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Huta_2628
03410 Base excision repair
Huta_2628
03420 Nucleotide excision repair
Huta_2628
03430 Mismatch repair
Huta_2628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hut03032
]
Huta_2628
03400 DNA repair and recombination proteins [BR:
hut03400
]
Huta_2628
Enzymes [BR:
hut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Huta_2628
DNA replication proteins [BR:
hut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Huta_2628
DNA repair and recombination proteins [BR:
hut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Huta_2628
NER (nucleotide excision repair)
GGR (global genome repair) factors
Huta_2628
MMR (mismatch excision repair)
DNA ligase
Huta_2628
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Huta_2628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
IPPT
HHH_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACV12790
UniProt:
C7NMK5
LinkDB
All DBs
Position
2701239..2703320
Genome browser
AA seq
693 aa
AA seq
DB search
MTAVEPPDNPYVENPPTDFESVDALDAESAHEQAEQLREAIRYHDHQYYVENDPVIGDRT
YDALFARLQDLEDGFGLDRENSPTQRVGGEPLDKLASVEHVAPMQSIDQGGEVTEVREFD
ERVARGMGDAGFDPDERTYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRT
IPSVPGRLRGDYPDTLAVRGEVYIPTDAFQAYNRERIERGDDPFANPRNAAAGTLRQLDP
SITAERPLAIFFFGVLDASVEFEQNSEVYERLPEWGLRVTDLAEEVDSIEDAIDYRDRLL
DERDDLPFEIDGVVIKLNDRAACDALGSTARAPRWAFAYKFPARTERTTIRDVVVQVGRT
GRLTPVALMDPVEVGGVMVSRASLHNPAEIERLGVDVGDEVRVQRAGDVIPEVAEVLDAA
SDGTFDFPESCPVCDSPVERDGPLAFCTGGLACPAQLERAIVHYASRAGLDIEGLGEERV
QQLLDAGLVEELADLYELGQLDLTSLEGWGMQSVANLQEELEASREPPLDDFLAALNVPS
LGAATATALAREFGTFEAVMDADREQLQAVDDIGPKVAAEIREFFETERNREAIERLLDH
VDPQPYEVEGGDELDGLTFVFTGTLSNYTRSEAQELVEVHGGSATSSVSGNTDYLVVGEN
PGQRKRDDADANDVQILDEDEFEELLAGRGVLD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgacagcggtcgagccgccggacaacccctacgtcgagaacccaccgacggacttcgag
tcggtcgatgcactcgacgccgagtccgcccacgagcaggccgaacagttgcgcgaggct
atcagatatcacgaccaccagtattacgtggaaaacgaccccgtcatcggcgaccggacc
tacgacgccctgttcgcccgtctgcaagacctcgaagacggcttcggcctcgaccgcgag
aacagccccacccagcgcgtcggcggcgaaccgctggacaaactcgcatccgtcgagcac
gtcgcgccgatgcagtcgatcgaccagggtggcgaggtgacggaggtccgggagttcgat
gagcgcgttgcccgcgggatgggcgacgcgggctttgaccccgacgagcggacctacttc
tgtgagccgaagttcgacggcctctcggtcgaaatcgtctacgaggacggcgtctaccag
cgggcggcgacccgcggggacggcgaggtcggcgaggacgtcaccgagaacgtccgaacg
atcccgagcgtgccgggccgactgcgcggcgactatccggacacgctggcggtccgcggg
gaggtctacatcccgaccgacgcgttccaggcgtacaaccgcgaacgcatcgagcgcggc
gacgaccccttcgccaacccccgcaacgcggccgcgggcaccctccggcaactcgatccc
tcgatcaccgccgagcgccccctggcgatcttcttcttcggcgtgctggacgcgagcgtc
gagttcgaacagaacagcgaggtctacgaacgcctgccggagtggggactgcgggtgacc
gacctcgccgaggaggtcgactcgatcgaggacgccatcgactaccgcgaccgcttgctc
gatgaacgggacgacctccccttcgagatcgacggcgtcgtgatcaagctcaacgaccgg
gcagcctgtgacgcgctgggatcgaccgcgcgcgcgccacggtgggccttcgcctacaag
ttccccgcccggaccgaacggacgacgatccgggacgtcgtcgtccaggtcggccggacc
gggcggctgacgcccgtcgcgctcatggacccagtcgaggtcggcggggtgatggtctcg
cgtgcctcgctgcacaatcccgccgagatcgagcggctgggtgtcgacgtcggcgacgag
gtgcgcgtccagcgggccggcgacgtgattccggaggttgcggaggtcctcgatgcggcg
agcgatgggaccttcgacttccccgaatcctgtcccgtctgtgacagcccggttgagcgg
gacggcccgctggcgttttgtaccggcggactggcctgtcccgcccagttagagcgggcg
atcgtccactacgccagccgcgccggcctcgatatcgagggactgggtgaggaacgcgtt
cagcaactcctcgatgccggactggtcgaagaactggcagacctctacgaactcggccag
ctcgatctcacctcgctggaaggctggggtatgcaatctgtcgccaacctccaggaggaa
ctcgaagccagtcgggaacccccgctcgatgacttcctcgcggcgctgaacgtcccctcc
ctcggtgcggcgacagcgaccgcactggcacgcgagttcgggacgtttgaggcagtgatg
gacgctgaccgcgagcagcttcaggcggtcgacgatatcgggccgaaggtggccgcggag
atccgggagttcttcgagaccgagcgcaaccgcgaggcgatcgagcgcttactggaccac
gtcgacccacagccctacgaggtcgagggtggcgacgaactcgacgggctgacgttcgtc
ttcaccgggacgctttcgaattacacccgaagcgaggcccaggaacttgtcgaggtccac
ggcggatcggccaccagtagcgtctcgggcaacaccgactacctcgtggtcggcgaaaac
ccgggccagcgcaaacgcgacgacgccgacgccaacgacgtgcagattcttgacgaggac
gagttcgaggaactgctggccgggcgtggcgttctggactga
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