Humibacter ginsenosidimutans: FPZ11_04075
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Entry
FPZ11_04075 CDS
T06119
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
huw
Humibacter ginsenosidimutans
Pathway
huw03030
DNA replication
huw03410
Base excision repair
huw03420
Nucleotide excision repair
huw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FPZ11_04075 (ligA)
03410 Base excision repair
FPZ11_04075 (ligA)
03420 Nucleotide excision repair
FPZ11_04075 (ligA)
03430 Mismatch repair
FPZ11_04075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
huw03032
]
FPZ11_04075 (ligA)
03400 DNA repair and recombination proteins [BR:
huw03400
]
FPZ11_04075 (ligA)
Enzymes [BR:
huw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FPZ11_04075 (ligA)
DNA replication proteins [BR:
huw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FPZ11_04075 (ligA)
DNA repair and recombination proteins [BR:
huw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FPZ11_04075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPZ11_04075 (ligA)
MMR (mismatch excision repair)
DNA ligase
FPZ11_04075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FPZ11_04075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QDZ16681
UniProt:
A0A5B8M955
LinkDB
All DBs
Position
complement(834695..837097)
Genome browser
AA seq
800 aa
AA seq
DB search
MGVVTDIPADFDDARAESEALRERIERNRVAYYEGGSLISDAEYDADIHRLEAIEREFPQ
LAGQDSPTQTVGAAIASAGFPPHEHAERMLSLDNVFSVDELREWAAKTVDASGHPVRWLT
EAKIDGLAISLAYRDGVLETATTRGDGTVGENITENVDWIPCIPQRLSGSGWPEFFEVRG
EVFLKTVDFEFLNERQHQLQEQYAAEQRARGKTDDEIKTKYPEFANARNTAAGSLRQRRE
NKSPQELELMRERQGRLSLYLHTLGAWANPPMATQSQGYELLRGWGLPVSPHNRVLGDID
EVAAYIEEMGEQRHSLEHDIDGVVVKVDDLATHDELGATSRAPRWAIAYKYPPEEVFTKL
LDILVGIGRTGRATPYAVMEPVKVAGSTVRQATLHNQQVVKAKGVLIGDTVVLRKAGDVI
PEILGAVEERRDGTEREWHMPEFCPECGTRLAPAKEGDIDLRCPNSRSCPAQVRGRVEHI
AGRGSLDIEALGEVAAAALTQPLRPPVPPLPTEAGLFDLTLERIFDIEVIVRDHETGLPK
EAEDGEPGHELTTDDGVTIRVRTDTPFRRQRRLTGKDADAAFDPGAAAFAGTPSHVPSKT
AHDMLSNIDAAKQKDLWRFLVALNIRHVGPVAARALANWFGSLDAIRAATRDDLAAVDGV
GGIIADAVLAWFEVDWHRDIVDRWTAAGVPFAIHGHPGPGKASEAGGLLAGLTIVATGSL
EGFTRDGAQEAIIAAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGIPILDAAQFALLV
TEGPAALEGVAETDDSGGNA
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
attggcgtcgtgacggacatccccgcagacttcgacgacgcccgtgccgagtccgaggcg
ctccgcgagcgcatcgagcgcaatcgtgtcgcgtattacgagggcgggagcctgatcagc
gacgcggagtacgacgccgacatccaccgtctcgaggccatcgagcgcgagttcccccag
cttgcgggccaggacagcccgacgcagacggtcggcgccgcgatcgcgtcggccggattc
ccgccgcacgagcacgccgagcgcatgctcagcctcgacaacgtgttcagcgtggacgag
ctgcgcgaatgggcggcgaagaccgtggatgcctcgggtcaccccgttcgctggctcacc
gaggcgaagatcgacggcctcgccatcagcctggcttatcgcgacggagtgctggagacc
gcgaccacccgcggcgacggcaccgtgggtgagaacatcaccgagaacgtggactggatt
ccgtgcatcccgcagaggctgtccggcagcgggtggccggagttcttcgaggtgcgcggc
gaggtgttcctgaagaccgtcgacttcgagttcctcaacgagcggcagcaccagctgcag
gagcagtacgcggccgagcagcgggcgaggggcaagacggatgacgagatcaagacgaag
tatcccgagttcgcgaacgcgcgcaacacggcggcgggcagcctgaggcagcggcgggag
aacaagtcgccccaggagctcgaactcatgcgagagcggcaggggcggctttcgctctat
ctgcacacgctgggagcgtgggcgaatccgcccatggccacccagtcgcagggctacgag
ctgctgcgcggctggggcctgcccgtctcgccgcacaacagggtgttgggggacatcgac
gaggtcgcggcctatatcgaggagatgggggagcagcggcactccctcgagcacgacatc
gacggcgtggtcgtgaaggtcgacgacctcgccacccatgacgagctcggcgccacgagc
cgtgctccgcggtgggccatcgcgtacaaatatccgccggaagaggtgttcaccaagctg
ctcgacatcctggtcggcatcgggcgcacgggcagggcgacgccctacgccgtgatggag
ccggtgaaggtcgcgggcagcaccgtgcggcaggccacgctgcacaaccagcaggtggtc
aaggcgaagggcgtgctcatcggagacaccgtcgtgctgcgcaaggccggtgatgtcatc
ccggagatcctcggcgccgtcgaggagcgacgcgacggcacggagcgcgagtggcacatg
cccgagttctgcccggagtgcggcacccgtctcgcacccgccaaagagggcgacatcgat
ctgcgctgcccgaactcgcgatcgtgcccggcgcaggtgcgcggtcgcgtcgagcacatc
gccggccgcggatcgctcgacatcgaggcgctgggtgaggtggcggccgcggcactcacg
cagccgctgcggccgccggtgccgccgcttccgacggaagccgggctgttcgacctcacc
ctggagcgcatcttcgacatcgaggtcatcgtgcgcgatcacgagacgggcctgccgaaa
gaagcggaagacggcgagccgggccacgagctcaccaccgacgacggcgtgacgatcagg
gtgcgcaccgacacgccgttccgccggcagcgcagactcaccggcaaggacgccgacgcg
gctttcgacccgggcgccgccgcgttcgcgggcacgccgtcgcacgtgccgtcgaagaca
gcgcacgacatgctgtccaacatcgacgccgccaagcagaaggacctctggcgcttcctt
gtcgcgctcaacatcaggcacgtcggtcccgtcgccgcacgggcgctcgcgaactggttc
ggctcgctggatgccatccgcgcggccaccagagatgacctcgccgccgtcgacggtgtg
ggcggcatcatcgccgacgcggttctcgcgtggttcgaggtcgactggcaccgggacatc
gtcgatcgctggacggcggccggtgtgccgttcgcgattcatgggcatccgggaccggga
aaggccagtgaagccggcggactgttggcgggactcacgatcgtcgccacgggatcgctg
gagggcttcacgcgggatggcgcgcaggaggcgatcatcgcggccggaggcaaggccgcg
tcgagcgtgtcgaagaagaccgacttcgtggccgcaggcccgggagccggctcgaagctc
gccaaagccgaggaactcggcatcccgattctcgatgccgcccagttcgctctgctcgtg
acggaaggtccggcggcgctcgagggtgtcgccgagacggacgacagtggcgggaacgct
taa
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