Hordeum vulgare subsp. vulgare (domesticated barley): 123412617
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Entry
123412617 CDS
T11213
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hvg03036
]
123412617
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123412617
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
123412617
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
123412617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
LIM_FHL2-3_N
Fib_alpha
B12D
Motif
Other DBs
NCBI-GeneID:
123412617
NCBI-ProteinID:
XP_044961503
LinkDB
All DBs
Position
7H:complement(435669289..435703331)
Genome browser
AA seq
1574 aa
AA seq
DB search
MASCESEKWAVVEYGHHGPSTKVYRFQILLPNGTSTSLTLCDPGEEMPLPDFLHLIREEL
GDALAHGGQRRGIEWDGDVYLEDLLDRKIDKKVQFSDFVTKGTNILRLQDGEEFVRTYEN
MWDLTPPTELLQELPAEYSTESALADLVDNSLQALWSNGDKQRKLIRITVDGGKIVVFDT
GRGMDGSEENSISKWGTMGSSNHRVFRKQGIGGKAPYLVPVFGMFGYGGTIASMHLGRTA
IVSSKTKESRKVFTLHLSREALLEKSSSKLSWKTAGGVRDPSEEQLALSPHRSFTQVEIH
GLNRHLELGKLQGFLKDIYFPYIQYDEDNGSMSTRRPVQFEVNGVDLAEIQESEVTLTNL
HSSNGPDFILHLKFSCTSTNAASRQAHARIKCVYFPIVKGKESIDSILDKLSENALGVKE
NFDNFSRVSIRRLGRLLPDARWGPLPFMEPKQSKGQKAELLKRCCKRVKCFVETDAGFNP
TLSKTDLAQHDIFTNALRCFDGSCRNDSSVEEVSVDARKDERSLNRTQLEKQYHDWIITM
HAKYDVEMDGGDDEHTVIINPSNKERLGISKDVQVIRVHTSVRRKGKTWRRGDHLKIQPG
VVARTKNNFYSSKSIFYGTLEYVVVEGLQGDICGEARLICRSIECPGDQGCLLEVGQDSM
HLNIKESFSFPVIMIDDNKCQTMEEDSWCQMLKKKSGKAPACIEVLRNLQGNALAVDGDL
PFEEVIMAGYNHPREVIAVIRPQNATTCSTSLLDKRYILKDDDLEMALEINHLSGSKDHL
HAKLIYKKLKKPSSRNSINGLYIFQLSEERSMFTKSGVYSIIFSVRCRDSTVIKHEAKIT
VCPNSNTRHWKLSCDADWSAENAVLDIRLGMPVQCLAARSLDLYGNGIPFLDIDKAVITI
LGGDDILANVKDIKVDLSTDLLTLYIRDFLVKTNILDRLRPNYEAMLKISLCDSEFSHPC
KVKPGIPSTINMDMSLAWEKNLTPGEVIDDALLEVLDHCGNHVEEGTELRVYTVGLSFVD
KYGPVRKVNSEGFVDLRGLLKVVSGFGSKVSLTIFHNKKKIFNRSFQIAIRNLKAVKVPE
SCRAGTFLENIIFEVSVCDGVIDESIHGPRHTLSIRSNQLKHVEGAQYTFAHGRCVLPHA
QVPDEPGTVSFVAYHTHFADLETIIQVPILHIGLYALDLVPENLESDFEPICSYPTSSVS
NQDLLPPSQPASCQSVRFIEDAMKKVSDEIETIDSNIHSEEEFIKFLDSHKKSVANRIAT
LKDEIGHRIGEKELTRQKIEENVGTAAAVLCNLTNRKRYEPGRCFKDEVVGIVALLGTVN
NRELSRMLSVYLGEDNMLAVVCKTLDAANYFEKYDTDGNVDIHFGIHQEAANLGVPISRR
FPIICLDEIRPYNGSLVWNTRQKKLNLPSPHSETCKGFHGFAVNLINLSAENLEITTSRG
HGLRETLLYRLFGELQVYETRNDMRQAMPHLRNGAISLDGGIIKGDGMLLLGYSDPEITF
PIMPDAPDILEDSEDVFFKVKKMNAEKNVLETVENKIRKAEEKWQKLVMKRNKKKRKFDE
MAGVMSQPSGSQLE
NT seq
4725 nt
NT seq
+upstream
nt +downstream
nt
atggcgagctgcgaatccgagaagtgggctgtggtggaatacggacaccacggtccttca
accaaagtctaccgtttccagatcctgttgccaaatggcacaagcaccagccttacgctg
tgcgatcctggagaagagatgccgcttcctgatttcttgcatcttattcgggaagagttg
ggcgatgccttggcacatggtggtcaaaggcggggaattgaatgggatggcgatgtttat
ctagaggacctgctggacagaaagatagacaagaaagtgcagttcagtgattttgtcacc
aagggtactaacatattaagactccaggatggtgaagaatttgtcaggacatatgagaat
atgtgggaccttacacctccgactgaactgcttcaagagcttccggcagagtatagcact
gagagtgctctcgcagaccttgttgacaactcattacaggctttgtggtcaaatggtgac
aagcaaagaaagttaatcaggataactgtcgatggtggaaaaattgtggtttttgatact
ggtagggggatggacggttcagaagagaattctatctctaaatggggtacaatgggttct
tctaaccacagagtatttcggaaacaaggtatcggcgggaaagcgccatacttagtgcct
gtctttggcatgtttggctatggtggaactattgcatcgatgcatcttggaagaactgcc
atagtttcttctaaaactaaggaatcaaggaaagtgtttaccttgcatctttcgagggag
gctctgttggagaagtcctcgtctaaactcagctggaagactgctggaggagttagagat
ccatctgaagaacagttggcactgtcgccacatcgaagttttacacaggtggaaatccat
ggcttgaataggcacttggagctaggaaaacttcaaggatttctgaaggacatatatttt
ccatacatacagtatgacgaggataatggatctatgagtacaaggaggccagttcaattt
gaggtgaatggtgtggatctagcagaaatacaggaaagcgaagtgacacttactaatctg
cactcctctaatggtcctgatttcattctgcatctaaaattttcttgtacttcaacaaat
gcagctagtcgccaagcccatgcacgaatcaagtgtgtatactttccaattgtcaaggga
aaagaatctatcgattctattttagataagttaagcgaaaatgccttgggggtaaaagaa
aacttcgacaatttttcacgtgtgtcaatccgccgacttggccggttactcccggatgca
agatggggtcctcttcctttcatggaacccaaacagagtaaaggacaaaaagctgaactc
ctgaagcgatgctgcaagagggtgaaatgttttgttgaaacagatgcaggttttaatcca
actctttctaagactgatttagcacaacacgatatttttaccaatgcacttcgctgcttt
gatggcagttgtcgtaatgacagctcagttgaggaggttagtgttgatgctcgtaaagat
gaaagatcactaaatcgtacgcaattagagaagcagtatcatgactggattattacaatg
catgcaaagtatgacgtggaaatggatggaggggacgacgagcataccgttattatcaac
ccaagcaacaaggagcgacttggaatatctaaagatgttcaagttattagggttcacacg
tcggttagaaggaaaggaaaaacatggagaagaggagatcatctgaaaatccagccagga
gtagttgcacgaacgaaaaataatttctactcctcgaaaagcattttctatggaacactg
gaatatgttgttgttgaaggacttcaaggagatatttgtggtgaagctcgacttatatgc
aggtctattgagtgccctggtgatcaaggttgcttactcgaggtaggtcaagatagtatg
caccttaatatcaaggaatctttctccttccctgtcatcatgatagatgataacaagtgt
caaaccatggaagaggattcgtggtgtcaaatgcttaaaaagaaaagtgggaaggctcca
gcatgtattgaggtcttacggaatttgcaaggcaatgctctcgctgtagatggggatcta
ccgtttgaagaggttataatggctggttataaccatccacgtgaagttatagctgtaatc
cggccacaaaatgctactacctgctcgaccagcctccttgacaagagatatattctgaag
gatgatgatctagagatggctctggagattaatcatctgtctggtagcaaagatcatctt
catgcaaagcttatttataaaaagctcaagaaaccctcatcacgcaatagcataaacgga
ctgtatatctttcagttgagcgaagagcgaagcatgtttactaaatctggtgtttacagt
attattttctcagttaggtgcagagattcaactgtcattaagcatgaggcgaagataaca
gtttgtccaaactccaatactagacattggaagttatcctgtgatgctgattggtctgct
gagaatgctgtactagatataaggcttggaatgccagttcaatgtcttgcagctagaagc
cttgatttgtatgggaacggaattcctttccttgatatagataaggccgtcataactata
cttggtggtgatgatattctggctaatgttaaggacatcaaagtggatctctcaactgat
ttattgactttgtatatcagggattttctggtcaaaaccaacatattggacagattaagg
ccgaattatgaagcgatgttaaagatttctttatgtgatagtgaattctctcatccatgt
aaagttaagccaggtattccctcaacaattaatatggatatgtcccttgcttgggagaag
aatttaactcctggagaagttattgatgatgcccttctagaggtgctcgatcattgtggc
aatcatgttgaagaagggacggaacttagggtctatactgttggactctcctttgtagat
aaatatggacctgttcgaaaggtaaacagcgaaggatttgttgacctacgtggattgctt
aaagtcgttagtggatttggttcaaaagtttctttgacgatttttcataacaagaaaaag
attttcaatagatcatttcaaattgctatcaggaatttgaaagctgttaaggttccggaa
agttgtcgagctgggaccttcttggagaacataatatttgaagtttctgtttgtgatgga
gtgattgacgagtccatacatggaccccgacatacactcagcatcaggtcaaatcaatta
aaacatgtggaaggagcacaatatacatttgcacacggaagatgtgttcttcctcatgca
caggttcctgatgaaccaggaacagtcagttttgtggcatatcatacacattttgctgac
ctggaaaccataattcaggttccgatcctacatataggtctgtatgctcttgatttagtg
ccagaaaatttggagagcgattttgaacctatatgcagctacccaacttcatctgtatca
aatcaagatcttttacctccaagtcaacctgcttcttgtcaatctgttagattcattgag
gatgctatgaagaaagtttctgatgagattgaaacaattgattccaatatacactcggaa
gaagaatttattaaatttcttgattctcataagaaatctgtggcgaatcgtattgccact
ctaaaagatgagattggccacagaattggcgaaaaagagttaactcgtcaaaaaatcgaa
gagaatgttggtactgctgctgctgttctgtgcaatctcaccaaccgtaaacggtatgaa
ccaggacgatgtttcaaggatgaggttgttggtattgttgctcttctcggaactgttaat
aacagagagctcagtaggatgctttctgtatatcttggtgaagataacatgcttgcagtg
gtttgcaagactctggatgctgctaattactttgaaaaatatgacactgatggaaatgtg
gatattcactttggtattcatcaggaagcagctaacctaggagtcccaataagcaggaga
tttcctatcatatgcctggatgaaataaggccatataatggaagcctcgtttggaacaca
aggcaaaaaaagctaaatctgccttctccacattcggagacgtgcaagggatttcatggg
tttgcggtcaacttgatcaacctttctgcagagaacttggagataaccacaagtagagga
catggtctccgtgaaaccttattatataggctctttggagagcttcaagtttatgaaaca
cggaatgacatgcggcaagctatgcctcatttgaggaatggggctatatctttggatggt
gggattataaagggtgatggtatgctgctgcttggttacagtgacccggagatcacattt
cccatcatgcctgatgctcctgacattctggaagactcggaggatgtgttcttcaaagtc
aaaaagatgaatgcagaaaagaatgttctggaaacagtggagaacaagataaggaaagcc
gaagagaaatggcagaaattggtcatgaagcgcaacaagaagaaacgcaagtttgacgag
atggcgggggtaatgagccaacccagtggtagccagcttgaatag
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integrated database retrieval system
