Hordeum vulgare subsp. vulgare (domesticated barley): 123442795
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Entry
123442795 CDS
T11213
Name
(RefSeq) tRNA pseudouridine(38/39) synthase isoform X1
KO
K01855
tRNA pseudouridine38/39 synthase [EC:
5.4.99.45
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hvg03016
]
123442795
Enzymes [BR:
hvg01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.45 tRNA pseudouridine38/39 synthase
123442795
Transfer RNA biogenesis [BR:
hvg03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
123442795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Ribosomal_L18_c
Motif
Other DBs
NCBI-GeneID:
123442795
NCBI-ProteinID:
XP_044974872
LinkDB
All DBs
Position
3H:32323450..32330230
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AA seq
468 aa
AA seq
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MAAGDGGDTVAVPTEIAALRLRVLELERENQRLAQIASTCSCGSKEDNIPPSLVENRDQQ
VQKNVKSQKSRISDYDVSLPFDHMMISTENQVLCDVKGEGHDDLSKIRRKHSKRTGHQVG
NVSHCQKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERARLLVGSIKDACYSRC
GRTDKGVSATGQVISLYLRSNFKEAGGNVLGERSEIDYVSVLNRNLPRDIRVIGWCPVSA
DFLARFSCLGREYKYLFWKGGLDVSKMQEAAFKFIGEHDLRNFCKMDAANVSNYKRCITD
FTISACDQRSNHDELWSMNIRGSAFLWHQVRCMVAVLFLVGQGLESPCVVDSLLDITKTP
RKPQYTMAPELPLILRSCLFDRVNFMCSSDASQALIEHLKDEYHQYMLQAAIFDEALTCL
CIPDVNAEANPSESPKKKRKHIPLLSRETEPSYEERRARVKAKSATCS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggtgacggcggcgacacggtggctgtgccaacggaaatcgccgcgctccgg
ctgcgcgtactggagttggagagggagaaccagaggctggcccagattgcttccacctgt
agctgcggctccaaggaggacaatataccgccttctttagttgagaaccgtgatcagcaa
gtacagaagaatgtgaaatcacagaaaagtagaatctcagactatgacgtaagccttccg
ttcgatcacatgatgatatctactgaaaatcaagtactgtgtgatgttaaaggggaaggg
catgatgatttatctaaaattcgaaggaagcattctaaaagaacaggtcaccaagtaggg
aatgtaagccactgccaaaagcgactaattgctctgaaaatcatgtactttggccagaga
ttctatggctttgcttcagaagcccacacagagccaacggtcgagtctgagatattcaaa
gcacttgaaagagcaagattactggttggaagtattaaagatgcatgctattctaggtgt
ggaagaactgacaaaggagtttctgctactggacaggtaatctccttatatttgcgatca
aattttaaagaagcaggagggaatgtattgggtgaaagatctgaaatcgattatgtaagt
gtattgaatagaaatcttccacgagatatacgtgtaataggttggtgtccagtttcagca
gactttctcgcaagattctcctgcttgggtagggaatataagtacttgttttggaagggg
ggcttggatgtatcgaaaatgcaggaagctgcatttaaattcatcggggaacatgactta
aggaatttctgtaagatggacgcagcaaacgtgagcaactacaagcgatgcattacagat
tttactatttctgcgtgtgaccaaaggtccaaccatgatgagctatggtccatgaatatc
aggggtagcgcctttctgtggcatcaagttcgttgcatggtagctgttctttttcttgta
ggtcaaggccttgaatcaccttgtgtagttgattcattgctggatattaccaagacacct
agaaaacctcaatatacaatggcaccagagctcccattgattctacgatcttgtctattc
gatagagtcaatttcatgtgttcatcagatgccagtcaggctttgattgaacacttgaag
gatgaataccatcagtatatgctccaagctgccatatttgatgaggctttgacctgtttg
tgtattccagatgtcaatgcagaggctaatccatctgaatcccctaagaagaagagaaaa
catatccctctcctgtcacgggaaacagaaccttcttacgaggaacgcagagcaagagtc
aaagctaagtcagcaacgtgtagttga
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