Hordeum vulgare subsp. vulgare (domesticated barley): 123448788
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Entry
123448788 CDS
T11213
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123448788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123448788
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123448788
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
Arf
AAA_15
AAA
ATP-synt_ab
ORC-CDC6-like
nSTAND3
AAA_23
Zeta_toxin
AAA_25
AAA_28
AAA_24
AAA_30
AAA_22
Motif
Other DBs
NCBI-GeneID:
123448788
NCBI-ProteinID:
XP_044981731
UniProt:
F2CPR2
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All DBs
Position
4H:complement(416518291..416521510)
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AA seq
311 aa
AA seq
DB search
MAPTVEIRNLTFTYPGIDGKPPPGAPPLIEDVCFSLEAGQRCLLVGSNGAGKTTILKILG
GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMLF
GVTGVDPQRRDELIKILDIDLTWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV
LARANLLTYLKKECAEQGATIIYATHIFDGLDDWPTHIVYVAHGKLQLALPLEKVKEMSQ
LSLMRTVERWLRKERDEDRRKRKERKEKGLPAFDKVIEGSRVVNNGWAAGRLTSTIAGEE
NFSLSSNSVLR
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacagtagagatcaggaatctcaccttcacctatccgggaatcgacggcaag
ccgccgcccggagcaccgcccctcatcgaggacgtctgcttctccctcgaagccggtcag
cgctgccttctcgtcggctccaacggtgcaggtaagacaacgatactgaagatactaggc
gggaagcacatggtggatccgagcatggttcgggtcctgggaaggtcggccttccacgac
acggcgcttacttcctccggtgacctctgctaccttggcggcgagtggaggcgggatgtt
gcctttgctggctaccaggtgaatatacagatggacatttctgcagagaagatgctattt
ggtgtcactggcgttgatcctcagagaagagatgagcttatcaagattttggatattgac
cttacctggcgcatgcacaaggcatcagatggtcagaggagaagagtccagatttgcatg
ggacttctcaagccattcaaggttcttcttcttgatgagataacagttgatcttgatgtg
ttggcaagagcaaatctgttgacatatctaaagaaggaatgtgcggaacaaggtgcaaca
attatctatgccacacatatcttcgatggcctggatgattggccaactcacattgtctat
gttgctcatgggaagttgcaactagcgctgccattagaaaaggtgaaagaaatgagccag
ttatcgctcatgagaacagtagagcgctggctgagaaaagagagggacgaagacaggagg
aagagaaaggagcggaaggagaaaggcctcccggcattcgacaaggtcattgaggggagc
agagtagtgaacaacgggtgggcagcaggaaggctcacttcgacgatagccggtgaagag
aacttttctctcagttcaaacagcgttcttcggtag
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