Homalodisca vitripennis (glassy-winged sharpshooter): 124363085
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Entry
124363085 CDS
T09217
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124363085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvi03041
]
124363085
Spliceosome [BR:
hvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124363085
Complex C
U5 SnRNP specific factors
124363085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
124363085
NCBI-ProteinID:
XP_046674141
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All DBs
Position
5:complement(163068294..163092354)
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AA seq
974 aa
AA seq
DB search
MDADLYDEFGNYIGPELESDEEDDDDDIVEREPEQRDYDDDGVDDGVEDMEVAPMSVVLH
EDKRYYPAALEVFGPDVETIVQEEDTQALTVPLVAPIKKKKFQLKEQDLPETVYNMEFLA
DMMDTPHLIRNVALVGHLHHGKTTLVDCLIRQTHPGFREPTEERNLRYTDTLFTEQERGV
SIKATPVTLLLPDIKAKSHLLNIFDTPGHVNFSDEVTAAMRMSDGVVVFVDAAEGVMLNT
ERLIKHAVQEKLAITVCINKIDRLMLELKLPPQDAYYKIRHIVDEVNGLLSLYSDEETAH
VVSPLLGNVCFASAQYAVCFTLRSFANLYAQHYPGVNVKEFARRLWGDIYFNSKTRKFSK
KPPHGSAQRSFVEFILEPLYKLFAQVVGDVDSTLPAALDELGIHLTREEMKINIRPLLRL
VCGRFVNDFSGFVDMCIQHIPSPADSARAKVEHIYSGPTDSNLAQDMLNCDPEGRLMVHS
TKMYPTDDCTFFQVCGRVMSGTLHAGQEVRVLGENYTLADEEDSRILTVGRLWIYEARYK
VEVNRVPAGNWVLIEGIDQPIVKTSTITDLITTEDIYIFKPLKFNTQSVIKIAVEPVNPS
ELPKMLDGLRKVNKSYPLLATRVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADP
VVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQVVHISWNKKRLGEFF
QTKYDWDLLAARSIWAFGPDVTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGP
LCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQA
PADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCL
SVFHHWQIVPGDPLDKSIIIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFDDPML
LELARQDVMLNYPL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagatttgtatgatgagtttggaaattacattgggccggagctagagtctgat
gaagaagacgacgatgatgatattgtagaaagggagccagagcagcgtgattatgatgac
gacggtgttgacgatggggtggaggatatggaggttgcgcccatgtctgtggtccttcat
gaagacaagcgatattatccagctgcgctagaagtgtttgggccagacgtagaaacaata
gttcaagaagaagacacacaagctcttacagtccctcttgtagctcctattaagaaaaag
aagttccagttaaaagaacaagatttgccagagacagtttacaatatggaattcttggct
gacatgatggatacaccacatctgatccgtaatgtagccctggtgggacatttgcaccac
ggcaagacaacacttgtggactgcctgatccggcagacacatccgggattccgggagcca
acagaggaacgcaatctgcgctatacagacactctattcaccgagcaggagcggggagtg
agcatcaaagccactccggtcacattgctgctgcctgacatcaaagccaagtctcacctg
ctcaacatatttgatacacctggtcatgtgaacttctcggacgaggtgactgcagcaatg
cgtatgtcagacggagtggtggtgtttgtggacgcagctgaaggtgtgatgctaaacact
gaacgactgataaaacacgcagtccaggagaagctggccatcactgtgtgcatcaacaag
atagaccgtctcatgctggagttgaagctaccgcctcaagacgcgtactacaagatcaga
cacattgtcgacgaagtgaacggactgctcagtttgtactcggatgaggaaacagctcat
gtggtctcccctctgctgggcaatgtttgttttgcctctgctcagtacgcagtctgcttc
acattgcgctcattcgccaacctctacgctcaacattacccaggagtcaatgtgaaagag
tttgctcgacgcttgtggggagacatatattttaatagtaaaacacgcaaattcagcaag
aaaccaccacacggcagcgcacaacgtagctttgtcgagtttatcctggagcccttgtac
aaattgttcgctcaggtggtgggtgacgtggattctaccctcccggctgccttggacgag
ctgggcattcatctgacacgcgaggagatgaagataaacatccgccctctcttgcgtctt
gtatgtgggcgattcgtcaacgatttcagtggtttcgtggacatgtgtatacaacatatt
ccatccccggcagacagtgcccgagccaaagttgagcatatttattcaggtccgacggac
tcaaacctggctcaagacatgttgaactgtgatccagaaggtcgcctgatggtacatagc
acaaagatgtatcccactgacgactgtaccttcttccaagtatgtggccgcgtgatgagt
ggaacactgcacgctggacaagaggtcagagttctgggcgagaactacacactggcagac
gaagaggactccaggatactgactgtcggcagactctggatatacgaggcgagatacaaa
gtggaagtgaaccgtgtgccagccggcaactgggtgttgatcgaaggtattgatcagccg
atagtgaagacatcgacaatcactgatttgatcactacagaagatatctatatcttcaaa
cctctcaagtttaacacacagtctgtcataaaaatagcagtggaaccagtaaacccgagt
gagttgccgaagatgttggatggcctacggaaggttaacaagtcatatccgctgctggcg
accagagtggaggagtccggggagcatgtggtgctaggcaccggcgagctgtatctagac
tgtgtcatgcatgatctgcgcaagatgtactctgagattgacatcaaagtggcagatcca
gtggtggcattctgtgagactgttgtggaaacatcctctctcaaatgtttcgctgagact
cctaataaacgtaataagattacaatgattgctgaaccgttggaaaaaggactggctgaa
gatattgaaaaccaagtggttcacatttcgtggaataaaaagaggttgggagagttcttt
caaactaagtatgactgggatttactcgctgctcgttctatctgggcgttcggacctgac
gtgactgggcccaacatcctggttgatgacaccctaccatctgaggtggacaaggccctg
ctgggctctgtgaaagactcaatagtccagggatttcagtggggcacaagagagggccca
ttgtgtgaagaacccatacggaatgtcaagttcaagatcctggatgcagtcattgctcaa
gagccattgcacaggggaggaggtcaaatcattccgacggcaaggcgagtggcttactca
gcattcctgatggccactcctagactcatggagccgtacttgtttgtggaggtgcaagct
ccagctgactgtgtgtctgctgtctacactgtactagccaagcgcagaggacacgtaact
caagacgctccagttcctggctctcctctctacaccatcaaggctttcattcctgccatt
gactcttttggatttgaaacagacctgaggacccacacccagggtcaagctttctgcctt
tctgtgtttcaccactggcagattgttcctggtgatcctctggacaagagtatcatcatc
aggcctctggaacctcagcccgcaactcacttggcacgagagttcatgatcaagactcgg
cgcaggaaagggctcagtgaagatgtatccattaacaagttcttcgatgaccctatgttg
ttggagcttgctaggcaagacgtgatgctcaactacccgctgtaa
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