Vreelandella venusta MA-ZP17-13: EI420_03660
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Entry
EI420_03660 CDS
T05892
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hvn
Vreelandella venusta MA-ZP17-13
Pathway
hvn03030
DNA replication
hvn03410
Base excision repair
hvn03420
Nucleotide excision repair
hvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EI420_03660 (ligA)
03410 Base excision repair
EI420_03660 (ligA)
03420 Nucleotide excision repair
EI420_03660 (ligA)
03430 Mismatch repair
EI420_03660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hvn03032
]
EI420_03660 (ligA)
03400 DNA repair and recombination proteins [BR:
hvn03400
]
EI420_03660 (ligA)
Enzymes [BR:
hvn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EI420_03660 (ligA)
DNA replication proteins [BR:
hvn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EI420_03660 (ligA)
DNA repair and recombination proteins [BR:
hvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EI420_03660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EI420_03660 (ligA)
MMR (mismatch excision repair)
DNA ligase
EI420_03660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EI420_03660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AZM94834
UniProt:
A0ABX2B7Q6
LinkDB
All DBs
Position
779814..781877
Genome browser
AA seq
687 aa
AA seq
DB search
MSQPEKQLLEEISQLRADLDDANYRYYILDEPKLTDADYDRKLQRLKQLESEYPDLVSPD
SPTQRVGAAPADGFPEVAHAIPMLSLDNAFSRDDITAFAERVAERLECQANSVEFSCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGDNIPALLEVRGEVI
MRHAGFEALNDRAREEGSKVFANPRNAAAGSLRQLDPRVTATRPLEFHAYQVARLDMANL
GDGALSSSPMTTHSQQMERLKAWGFRSSTELRTVNGPELVADYCDQLGEKRDQLGYDIDG
VVIKVNDLRHQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPV
TVAGVTVSNATLHNADEITRLGVMIGDTVAIRRAGDVIPQVVRVDIDKRPAQARAITFPD
HCPVCGSDIERLEGEAVARCSGGLYCAAQRKEALKHFASRKALDVDGLGEKLIEQLVDLD
WVKTPADLFHLTAEQLQTLPRMGEKSSTNLVNALDKAKHTTLARFIYALGIREVGEATAA
NLASYFGTLQTLQEADQAALEAVNDVGPIVAAHVHTFFRQPHNLTTLKALLDAGITWQES
EVTQGPTPLEGQTWVLTGTMDTMTRDEGKARLQALGAKVAGSVSKKTACLVAGEAAGSKL
TKAEQLGVEVIDEATFIERLAVWEQSE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctgagaaacaacttctggaagaaattagccaactgcgtgccgatttggat
gacgctaattaccgctattacatcttagatgaacctaagctgaccgacgcagattacgac
cgcaagctgcagcggttgaagcaattggagtccgagtaccccgatttggtctcaccggat
tcgcctactcagcgcgtgggcgccgcgcccgcagatgggtttcctgaagtcgctcatgcg
attcccatgctttctttagataacgcatttagccgtgatgacattaccgcctttgctgag
cgtgtcgctgaacgtttggagtgtcaggcgaatagcgttgagtttagctgtgagccaaag
ctcgacggtgccgcggtatcgttagtgtacgagcagggcgtactggtcagtggtgcaacc
cgtggcgatggccgtaccggagaaggcattacatcgaatttgcgcaccttgcggtctgtt
ccgttaaagctaatgggcgacaacattccagcgttattagaagtacgcggcgaagttatt
atgcgccatgcgggctttgaagcgcttaatgatcgagcgagggaagaaggcagcaaggtc
tttgctaacccgcgtaatgcggcggctggcagtctgcgtcagcttgacccgcgagttacc
gcaacgcgcccacttgagtttcatgcttatcaagttgcccggctcgatatggcaaacctt
ggcgacggcgcgcttagcagtagcccaatgaccactcatagccagcaaatggaaaggctt
aaggcatggggctttcgttccagcacggagctccgcactgtcaatggccctgagctggtg
gctgattactgcgatcaattgggcgaaaagcgagatcaattgggttacgacatcgatggc
gtcgtgattaaagtaaacgatctgcgccatcagcgagagcttggctttgtagcgcgggcg
ccacgctgggcggtagcatttaaatttcctgcccaagaagaagtcacgacccttaacgat
gtggagttccaggtaggccgtaccggagcgatcaccccggttgctaggttagagccggtc
accgttgctggtgtgacggtatcaaatgcgacgctgcataacgccgatgagatcacccgc
ttaggtgtgatgattggtgatacggtagccatccgtcgggcaggcgacgtgattccccaa
gtggtacgcgtcgatatcgacaagcgtcctgcccaagcgcgtgcgattacctttcccgat
cactgcccggtgtgtggttcggatattgaacggttggaaggcgaggcggttgcgcgttgc
tcaggcgggctttattgtgccgcgcagcgtaaagaagcgctgaagcatttcgccagccgt
aaagcgctagatgtcgatgggttgggtgagaagctgattgaacagttggtggacctggac
tgggtgaaaacgccagcagacttatttcatctcaccgctgagcagcttcagacgctgccg
cgcatgggtgaaaaatcctcgaccaacttggtaaatgctctggataaggctaagcacacc
acgctggcacgttttatttacgccttgggtattcgcgaagtaggcgaagccacagcggca
aatttagccagctatttcgggacacttcagaccttgcaagaggctgatcaagcggcgctg
gaagcggtgaacgatgttggtccgattgtcgctgcccatgttcatacttttttccgtcaa
ccccataacctaacaacgctgaaagcactgcttgatgcgggcatcacctggcaagagagt
gaagtgacgcaaggcccgacacccttagagggacagacctgggtgctcaccggcacgatg
gataccatgacccgggacgaagggaaggcgcggctgcaagcgttaggcgctaaggtggcc
ggcagtgtttccaagaagactgcctgcttggtagcgggcgaggccgcaggcagtaaatta
accaaagcagagcaactgggcgttgaagtgattgatgaagccacctttattgagcgtcta
gctgtctgggagcagagtgaatga
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