KEGG   Haloquadratum walsbyi C23: Hqrw_4113
Entry
Hqrw_4113         CDS       T01942                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hwc  Haloquadratum walsbyi C23
Pathway
hwc03030  DNA replication
hwc03410  Base excision repair
hwc03420  Nucleotide excision repair
hwc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hwc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Hqrw_4113 (ligA)
   03410 Base excision repair
    Hqrw_4113 (ligA)
   03420 Nucleotide excision repair
    Hqrw_4113 (ligA)
   03430 Mismatch repair
    Hqrw_4113 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hwc03032]
    Hqrw_4113 (ligA)
   03400 DNA repair and recombination proteins [BR:hwc03400]
    Hqrw_4113 (ligA)
Enzymes [BR:hwc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Hqrw_4113 (ligA)
DNA replication proteins [BR:hwc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Hqrw_4113 (ligA)
DNA repair and recombination proteins [BR:hwc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Hqrw_4113 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Hqrw_4113 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     Hqrw_4113 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Hqrw_4113 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD DUF4796_N DUF6982
Other DBs
NCBI-ProteinID: CCC41836
UniProt: G0LFS3
LinkDB
Position
complement(3100634..3102877)
AA seq 747 aa
MSTTISDSIASMISRINDIVITVVPSGDSNDSHRHSQIICDGGRTIQPLDDSSETTLAYA
DPNNSYLNNIDGDFRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILF
DRLQALEDIFNLDTGASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRD
VVGDLEYICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETIGAVPLKLHGDY
PSYLAVRGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFF
YDILDATELPPDQWTTLSDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDG
TVIKVNDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPV
DVGGVTVSRASLHNPEEIKRLSVNSGDEVRVRRAGDVIPEVAEVTQKRATGTFNFPNQCP
ICHSSVEQDGPLAFCTGGLTCDAQLVRTIVHYGSRSALDIDGLGEQRVEQLVEAGIIGEL
ADLYTLSVADLSKLDGWGTTSAENLIQAISETQTPSLTDFLVGLGIPEVGPTIARNLAGT
FNNFDAIIDADEAALREIEDIGPTVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTAT
TNAPLSDLTFVFTGSLSVPRTTATTYIERHGGNATGSVSTNTDYLVIGDNPGSTKRIDAE
RNDVPEINETEFTELLAEHDDTLTWPP
NT seq 2244 nt   +upstreamnt  +downstreamnt
atgtctacaacaatctccgattcaattgcctcgatgatatctcgcatcaatgatattgtt
atcactgttgtgccatcaggtgattccaatgactctcatcggcactcacagattatctgt
gatggcggtcggactatccaaccgctagatgatagtagcgaaacgacccttgcgtacgcg
gacccaaataactcatatctaaacaatatagacggtgacttccgcccaattgaacaactc
tcagaggaagctgctgtcgaacaggcaacacaactccgcgaggcaatcagagagcatgat
tatcaatattatataagagcgtcacccatcatcgccgatcgagcgtatgatatactattt
gaccgccttcaggcgcttgaagatatatttaatctcgataccggagcaagtccgacacgt
cgtgtcggtggtgaaccacttgatgaacttgagacagtggaacatgttacatcgatgctt
tcgattgaccaatcaacggctgttgattcggttcgagacttcgatgagcgcgttcgcgat
gtcgttggtgatttggagtatatctgtgagccgaaatttgatggtctctctgttgaggtt
atctatgaagatggcgagtatatccgtgcagcaacgcgtggtgatggcaatcgtggtgat
gatgtgactgcgcaagtggagacaattggtgcagttccactcaaacttcacggcgattat
ccctcatatcttgctgttcgcggggaagtatatatgccaaaagcgggatttcgtgagtat
aatcgcgaacgaattgaatgtgatgagaaaccatttgcgaatcctcgaaacgctgctgct
gggacgcttcgacaacttgacccaggtgttgttgctgagcgaccattgtcttgttttttt
tatgatattcttgatgcaacagagctcccacctgatcaatggacaacactgagtgactta
cagtcatgggggcttcggacaaatgatcgaatcagtcgtgtcgactcaattgatgatgca
attgcatatcgagaccaactcaaagcagcacgggcagagctaaattatgagattgatggt
actgtaatcaaggtcaatgaccgtggtaatagagagatacttggagcgacaagccgatca
gtccggtgggcattcgcatataaattccctcctcgcgcggagattacacacattacagac
attgtcgtccaagtcggacgaacaggacgattaacacctgtggcgttacttgacccagtg
gatgtcggcggtgttactgtatcacgtgcatcactacacaatcctgaagaaattaagcgg
ctcagcgtgaatagtggtgacgaggtgcgggttcgtcgggctggcgacgtcattccggag
gttgctgaggtgacacagaaacgtgcaacgggtacatttaattttccgaatcagtgtcca
atctgtcacagttctgttgaacaagatggacccttagccttctgcacaggtgggctcaca
tgtgatgcacaactcgtccggacaatcgttcattatggaagccgttcagcactagatatt
gacggacttggcgaacagcgagttgagcaacttgtcgaggcaggtatcattggagaactc
gctgatctatatacactctcagttgcagatctgtctaaacttgatggctggggcacgaca
agcgcagaaaatcttatccaagctatttcggaaacgcagacaccatcactcacagacttt
cttgttggtcttggtatcccagaagtgggcccgactattgcacggaatctcgcaggaaca
tttaataattttgatgctattattgatgctgatgaagctgctctccgcgagattgaggat
attggtccgactgtttcaacgcatatttcggaattttttacaaatgaacagaatcgcgcc
gctattgataatctcctgtcagcaggcgttaccccgcagacacagcagtcaactgcaacg
acaaatgcaccactctctgatctgacatttgtattcaccggctcactttcagtcccacgc
acaacagcaacaacatatattgaacggcatgggggaaatgcgacgggaagtgtctcaact
aacactgattatctggttattggcgataatcctggcagcacaaaacggattgacgctgag
cgaaatgatgtacctgagattaacgagacggaatttacagaactacttgcagagcacgat
gacaccctcacctggcctccatag

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