Haloquadratum walsbyi C23: Hqrw_4113
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Entry
Hqrw_4113 CDS
T01942
Symbol
ligA
Name
(GenBank) DNA ligase (NAD)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hwc
Haloquadratum walsbyi C23
Pathway
hwc03030
DNA replication
hwc03410
Base excision repair
hwc03420
Nucleotide excision repair
hwc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hwc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hqrw_4113 (ligA)
03410 Base excision repair
Hqrw_4113 (ligA)
03420 Nucleotide excision repair
Hqrw_4113 (ligA)
03430 Mismatch repair
Hqrw_4113 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hwc03032
]
Hqrw_4113 (ligA)
03400 DNA repair and recombination proteins [BR:
hwc03400
]
Hqrw_4113 (ligA)
Enzymes [BR:
hwc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hqrw_4113 (ligA)
DNA replication proteins [BR:
hwc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hqrw_4113 (ligA)
DNA repair and recombination proteins [BR:
hwc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hqrw_4113 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hqrw_4113 (ligA)
MMR (mismatch excision repair)
DNA ligase
Hqrw_4113 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hqrw_4113 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
DUF4796_N
DUF6982
Motif
Other DBs
NCBI-ProteinID:
CCC41836
UniProt:
G0LFS3
LinkDB
All DBs
Position
complement(3100634..3102877)
Genome browser
AA seq
747 aa
AA seq
DB search
MSTTISDSIASMISRINDIVITVVPSGDSNDSHRHSQIICDGGRTIQPLDDSSETTLAYA
DPNNSYLNNIDGDFRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILF
DRLQALEDIFNLDTGASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRD
VVGDLEYICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETIGAVPLKLHGDY
PSYLAVRGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFF
YDILDATELPPDQWTTLSDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDG
TVIKVNDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPV
DVGGVTVSRASLHNPEEIKRLSVNSGDEVRVRRAGDVIPEVAEVTQKRATGTFNFPNQCP
ICHSSVEQDGPLAFCTGGLTCDAQLVRTIVHYGSRSALDIDGLGEQRVEQLVEAGIIGEL
ADLYTLSVADLSKLDGWGTTSAENLIQAISETQTPSLTDFLVGLGIPEVGPTIARNLAGT
FNNFDAIIDADEAALREIEDIGPTVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTAT
TNAPLSDLTFVFTGSLSVPRTTATTYIERHGGNATGSVSTNTDYLVIGDNPGSTKRIDAE
RNDVPEINETEFTELLAEHDDTLTWPP
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaacaatctccgattcaattgcctcgatgatatctcgcatcaatgatattgtt
atcactgttgtgccatcaggtgattccaatgactctcatcggcactcacagattatctgt
gatggcggtcggactatccaaccgctagatgatagtagcgaaacgacccttgcgtacgcg
gacccaaataactcatatctaaacaatatagacggtgacttccgcccaattgaacaactc
tcagaggaagctgctgtcgaacaggcaacacaactccgcgaggcaatcagagagcatgat
tatcaatattatataagagcgtcacccatcatcgccgatcgagcgtatgatatactattt
gaccgccttcaggcgcttgaagatatatttaatctcgataccggagcaagtccgacacgt
cgtgtcggtggtgaaccacttgatgaacttgagacagtggaacatgttacatcgatgctt
tcgattgaccaatcaacggctgttgattcggttcgagacttcgatgagcgcgttcgcgat
gtcgttggtgatttggagtatatctgtgagccgaaatttgatggtctctctgttgaggtt
atctatgaagatggcgagtatatccgtgcagcaacgcgtggtgatggcaatcgtggtgat
gatgtgactgcgcaagtggagacaattggtgcagttccactcaaacttcacggcgattat
ccctcatatcttgctgttcgcggggaagtatatatgccaaaagcgggatttcgtgagtat
aatcgcgaacgaattgaatgtgatgagaaaccatttgcgaatcctcgaaacgctgctgct
gggacgcttcgacaacttgacccaggtgttgttgctgagcgaccattgtcttgttttttt
tatgatattcttgatgcaacagagctcccacctgatcaatggacaacactgagtgactta
cagtcatgggggcttcggacaaatgatcgaatcagtcgtgtcgactcaattgatgatgca
attgcatatcgagaccaactcaaagcagcacgggcagagctaaattatgagattgatggt
actgtaatcaaggtcaatgaccgtggtaatagagagatacttggagcgacaagccgatca
gtccggtgggcattcgcatataaattccctcctcgcgcggagattacacacattacagac
attgtcgtccaagtcggacgaacaggacgattaacacctgtggcgttacttgacccagtg
gatgtcggcggtgttactgtatcacgtgcatcactacacaatcctgaagaaattaagcgg
ctcagcgtgaatagtggtgacgaggtgcgggttcgtcgggctggcgacgtcattccggag
gttgctgaggtgacacagaaacgtgcaacgggtacatttaattttccgaatcagtgtcca
atctgtcacagttctgttgaacaagatggacccttagccttctgcacaggtgggctcaca
tgtgatgcacaactcgtccggacaatcgttcattatggaagccgttcagcactagatatt
gacggacttggcgaacagcgagttgagcaacttgtcgaggcaggtatcattggagaactc
gctgatctatatacactctcagttgcagatctgtctaaacttgatggctggggcacgaca
agcgcagaaaatcttatccaagctatttcggaaacgcagacaccatcactcacagacttt
cttgttggtcttggtatcccagaagtgggcccgactattgcacggaatctcgcaggaaca
tttaataattttgatgctattattgatgctgatgaagctgctctccgcgagattgaggat
attggtccgactgtttcaacgcatatttcggaattttttacaaatgaacagaatcgcgcc
gctattgataatctcctgtcagcaggcgttaccccgcagacacagcagtcaactgcaacg
acaaatgcaccactctctgatctgacatttgtattcaccggctcactttcagtcccacgc
acaacagcaacaacatatattgaacggcatgggggaaatgcgacgggaagtgtctcaact
aacactgattatctggttattggcgataatcctggcagcacaaaacggattgacgctgag
cgaaatgatgtacctgagattaacgagacggaatttacagaactacttgcagagcacgat
gacaccctcacctggcctccatag
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