Halosquirtibacter xylanolyticus: K5X82_05430
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Entry
K5X82_05430 CDS
T10547
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hxy Halosquirtibacter xylanolyticus
Pathway
hxy03030
DNA replication
hxy03410
Base excision repair
hxy03420
Nucleotide excision repair
hxy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K5X82_05430 (ligA)
03410 Base excision repair
K5X82_05430 (ligA)
03420 Nucleotide excision repair
K5X82_05430 (ligA)
03430 Mismatch repair
K5X82_05430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hxy03032
]
K5X82_05430 (ligA)
03400 DNA repair and recombination proteins [BR:
hxy03400
]
K5X82_05430 (ligA)
Enzymes [BR:
hxy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K5X82_05430 (ligA)
DNA replication proteins [BR:
hxy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K5X82_05430 (ligA)
DNA repair and recombination proteins [BR:
hxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K5X82_05430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K5X82_05430 (ligA)
MMR (mismatch excision repair)
DNA ligase
K5X82_05430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K5X82_05430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
BRCT_2
RNA_lig_T4_1
Auto_anti-p27
HHH_8
mTERF
Zn_Ribbon_TF
Trm112p
Motif
Other DBs
NCBI-ProteinID:
QZT38346
LinkDB
All DBs
Position
1590668..1593229
Genome browser
AA seq
853 aa
AA seq
DB search
MTAIEVRNKIEKLRSEIHQHNYNYYVLNQPIVDDYDFDMLLKELETLEAKHPEYKDANSP
TQRVGSDLNKEFTQKQHEYPMLSLSNTYNFTELYEFDQRVKKNITEEFIYECELKFDGSS
ISLLYENGKLVQALTRGNGEVGDDVTNNARTIRTIPLELQGNYPDRFVIRGEILLPFKTF
DRLNTTRVAEGETRFANPRNAASGTLKLQNSSTVAKRGLDAYFYDILTEAPLVDGHYETL
ELARKWGFKISKDNRKCNNIEEVISYLEKWNTERANLDVATDGVVIKVNSKTLQNKLGFT
AKSPRWAVAYKFKAEKEITTLQSVSFQVGRTGAVTPVANLEPVALAGTIVQRASLHNADI
IANLDLHYQDKVFIEKGGEIIPKIVGIETSLRAAQALPVIFPTQCPECHTPLERNEGEAA
FYCPNHKGCPPQIKGKIEHFVSRNAMNIEWLGKETIHLLYEQKLLDSIADIYKLKERRAA
IEGLETIKRDDEKYPPLQIPYERVIYAFQFGIQNISLANAKVIAKAISDLSGIQSLSEEA
LTSLPLTFKKGETAKHLFRQIQTYFRIPIQKQIFETISVGDLKNGSISLHAVIKALKIPQ
ITEQDIAEIVEHAPFIVMLPSISLDTWKSILPDHKALIVYNYIHNLRVDKIISRCNQLSK
ISLKQKSVDNLLNAIEKSKDNQFHQLLFGLGIRFIGATAAKTLAKHFGSIDSLKQASFQD
LIDVNDIGEKMANSIRRYFEDDDNLKLVQELTNLGAPVSSNIPTPENHSNDSYSPTLDGV
TFVISGNFGTATRRKELGNMVEEYGGKLTSSISKKTNYLIAGENIGPSKLEKAQSLNIPI
INENDFIKMIEQN
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgattgaagttcgtaataaaatagagaagctaagaagcgaaatacaccagcac
aattataattactatgtgttgaatcaacctatagttgatgattatgatttcgacatgctt
ttaaaggaacttgaaactttagaagcaaaacacccagagtataaagatgcaaactctcca
acacaaagagttggaagtgacctcaacaaagagtttactcaaaagcagcatgagtaccct
atgctttctctttccaatacatataattttactgaactttatgagtttgaccaaagagta
aagaaaaacattactgaagagttcatatatgaatgtgaactcaagtttgatggatcttca
ataagtcttctttacgaaaatggaaaacttgttcaagcactaacaagaggtaatggagaa
gttggtgacgatgtgacaaataatgctcgtaccattcgcaccattcctttagaacttcaa
ggaaattatccagatcgctttgtcatcagaggagagatattactcccatttaaaaccttt
gacagactcaacaccactcgggtagcagaaggtgaaacaaggtttgcaaatccacgtaat
gcagcatctgggacattaaaactacagaactcatctaccgttgcgaaaagaggtcttgat
gcatatttttatgacattcttactgaggcccctttggttgatggccactatgaaacatta
gaacttgcacgtaagtggggattcaaaatctccaaagacaaccgtaaatgcaacaatatt
gaagaggtaatttcttatctagagaagtggaatactgaaagagctaatttggacgtagcc
actgatggcgtagtgataaaggtcaactctaaaacactacaaaataaactgggctttacc
gctaaatcgccaagatgggccgtggcatacaagtttaaagcagaaaaagagataaccaca
ctacaatcagtctctttccaagtggggcgtacaggagctgtaactcctgttgcaaattta
gaaccagtagcacttgcaggaaccatcgttcaaagagcttctcttcataatgcagacatc
attgccaatttagatttgcactatcaagacaaggtatttattgaaaaaggaggcgaaatc
attcctaagattgtcggtatcgaaacatctttaagagcagcgcaagcgcttcccgtgatt
ttcccgactcagtgccctgaatgtcatactccattagagagaaacgaaggagaggcagct
ttctactgccctaatcataaagggtgtcctccgcaaattaaaggaaagattgaacatttt
gtttctcgtaatgcaatgaatattgaatggttaggaaaagagaccatccatctattatac
gaacaaaaacttcttgactctattgcagacatatataaactaaaagaacgaagagctgcg
attgagggtttagagaccatcaaaagagatgatgaaaaatatccgccactacagatccca
tatgaaagagtaatctatgcattccaatttggaatacagaatatctctctcgcaaatgcc
aaagtaatcgcaaaagcaataagcgaccttagtggcattcaaagtctatcggaagaggca
ttaacatctcttccattaacattcaaaaagggtgagacagcgaagcatctattcagacag
atacaaacatactttagaattcctatccaaaaacagatctttgagactatttctgtagga
gacctaaaaaatggaagcatctctttacatgcagtcatcaaggcattaaaaatacctcaa
ataacagaacaagacattgctgagatagtagaacatgctccatttattgttatgttacca
tctatctcattggacacatggaagagtattctacctgaccataaagctttgattgtttat
aattacatacataatctcagagtagataaaatcatctctagatgtaaccaattatccaag
atctcgttaaaacagaaatcggtcgacaacctactaaatgcgatagagaaatcgaaggac
aatcagtttcatcagctattgttcggattaggaattcgatttattggtgcaactgcagct
aaaacacttgccaaacattttggatctattgattctcttaaacaggcatctttccaagac
cttattgatgtcaatgacattggtgaaaaaatggcaaactcaatcaggcgttattttgaa
gatgatgacaatcttaagttagtgcaggaactaaccaacttaggagcacctgtatcttca
aatattccaacaccagagaaccattccaatgattcgtactcaccaacactggatggagtc
acgtttgttatatcaggaaactttggaacggcaactagaagaaaagagctagggaatatg
gtagaagaatatggaggaaaattgaccagttctatctcgaaaaaaacaaactatcttata
gctggagaaaacattggaccatcaaaattagaaaaagcccaatctctgaacatccctatc
atcaatgaaaatgattttatcaagatgattgaacagaattaa
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