Hydrogenophaga sp. PBC: Q5W_10900
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Entry
Q5W_10900 CDS
T04491
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03030
DNA replication
hyb03410
Base excision repair
hyb03420
Nucleotide excision repair
hyb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q5W_10900 (ligA)
03410 Base excision repair
Q5W_10900 (ligA)
03420 Nucleotide excision repair
Q5W_10900 (ligA)
03430 Mismatch repair
Q5W_10900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyb03032
]
Q5W_10900 (ligA)
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_10900 (ligA)
Enzymes [BR:
hyb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q5W_10900 (ligA)
DNA replication proteins [BR:
hyb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q5W_10900 (ligA)
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q5W_10900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q5W_10900 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q5W_10900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q5W_10900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AOS79435
LinkDB
All DBs
Position
complement(2316170..2318326)
Genome browser
AA seq
718 aa
AA seq
DB search
MTPDLFAEPPQPASVAERAAELRAQLHHHAHLYYTLDAPKIPDAEYDRLFQELQAIEAQH
PELMTPDSPTQRVGGAILKALAPVRHAVPMLSIRTETDTEASGAAAFDARVRRELGLAEA
DPPVEYLAELKFDGLAMSLRYEQGVLVRAATRGDGETGEDVTHNVRTIGQIPLRLPNDVP
EVLEVRGEVYMRRDQFEALNERQREKIAQGAKGEKTFVNPRNAAAGAVRQLDSRIARERP
LSFFAYSWGEVVGDESPPATQYDWLMRLKAWGFPVAEQTAVCRGADELVAFHRRIGEQRD
ALPYDIDGVVYKVNSLDTQKRLGFVTREPRWAVAHKYPAQEQLTTVQAIDVQVGRTGKLT
PVAKLAPVFVGGVTVTNATLHNELEARRKDVRVGDTVIVRRAGDVIPEVVSVVLPSVQPE
PVEGASREGLRPFDKLRTGQAQPERGEPFTMPAHCPVCGSDAVREEGEADHRCTGGLFCA
AQRKQAILHYAQRRAVDIEGLGDKLVEQLVDSGLIKTLPDLYKLGLTALAGLERMAEKSA
QNVLDALQKRRETTLPRLLFGLGIRHVGEATAKDLSRHFGSLDRIMDASVDELLQVNDVG
PVVAQSIRTFFEQEHNREVVEQLRAAGVHWPENEGEHNTPQPLLGKTFVLTGTFPTLKRE
DAKAMLEAAGAKVAGSVSKKTDYVVAGEEAGSKLDKARELGVAVIDEAAMLALLQPDA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgacccctgacctcttcgccgagccgccgcagcccgcgtcggtggccgagcgcgccgcc
gagctgcgcgctcaattgcaccaccacgcccacctgtactacacgctggacgcgcccaag
atccccgacgccgagtacgaccgcctgttccaggagttgcaggccatcgaggcgcaacac
cccgagctgatgacccccgactcgcccacgcagcgcgtgggcggtgccatcctcaaggcg
ctggcgcccgtgcgccatgcggtgcccatgctcagcatccgcaccgagaccgacaccgag
gccagcggcgccgccgccttcgacgcgcgtgtgcgccgcgagctgggcctggccgaagcg
gatccgcccgtggagtacctggccgaactcaagttcgacggcctggccatgagcctgcgc
tacgagcagggcgtgctggtgcgcgccgccacgcgcggcgacggcgagaccggcgaggac
gtgacgcacaacgtgcgcacgatcgggcagattcccctgaggctgcccaatgacgtgccc
gaggtgctggaggtgcgtggcgaggtctacatgcgccgcgaccagttcgaggccctcaac
gagcgccagcgcgagaagatcgcccagggcgccaagggcgaaaaaaccttcgtgaacccg
cgcaacgccgccgccggcgccgtgcgccagctcgactcgcgcatcgcccgcgagcggccg
ttgagcttcttcgcctactcctggggcgaggtggtgggcgatgagtcgccgcccgccacg
cagtacgactggctcatgcgcctgaaggcctggggcttccccgtggccgaacagacggcg
gtgtgccgcggcgccgacgaactcgtggccttccaccgccgcatcggcgagcagcgcgac
gcattgccttacgacatcgacggcgtggtctacaaggtcaacagcctggacactcagaag
cgcctgggcttcgtcacgcgcgagccgcgctgggccgtggcccacaagtaccccgcgcag
gaacagctcaccaccgtgcaggccatcgacgtgcaggtgggccgcaccggcaagctcacg
cccgtggccaagctggcgccggtgttcgtgggcggtgtcaccgtcaccaacgccaccctg
cacaacgaactggaggcccgccgcaaggacgtacgcgtgggcgacaccgtgatcgtgcga
cgcgcgggggacgtgattcccgaggtggtgtcggtcgtcctcccgtccgttcagcctgag
cctgtcgaaggcgcatcgcgggaagggcttcgacccttcgacaagctcaggacaggccaa
gctcagcccgaacggggagagcccttcaccatgcccgcgcactgccccgtgtgcggcagc
gacgccgtgcgcgaggagggcgaggccgaccaccgctgcactggcggcctgttctgcgcc
gcgcagcgcaagcaggccatcctgcactacgcgcagcgccgcgcggtggacatcgagggc
ctgggcgacaagctggtggagcaactcgtggacagcggtctgatcaagaccttgcccgac
ctgtacaagctcggcctcaccgcgctcgcgggcctggagcgcatggccgagaagtcggcg
cagaacgtgctggatgcgctgcagaagcgccgcgagaccacgctgccgcgcctgctgttc
ggcctgggcatccgccacgtgggcgaggccaccgccaaggacctctcgcgccacttcggc
agcctggaccgcatcatggacgccagcgtggacgagctgctgcaggtgaacgacgtgggc
ccggtggtggcgcagagcatccgcaccttcttcgagcaggagcacaaccgcgaggtggtg
gagcagttgcgcgcggccggcgtgcactggcccgagaacgagggcgagcacaacaccccg
cagcccttgctgggcaagaccttcgtgctcaccggcaccttccccacgctcaagcgcgag
gacgccaaggcgatgctggaagcggccggtgccaaggtggctggctcggtgagcaagaag
accgactacgtggtggccggcgaggaggccggcagcaagctggacaaggcgcgggagctg
ggcgtggcggtgatcgacgaggcggcgatgctggcgctgttgcagcctgacgcctag
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