Hydrogenophaga sp. PAMC20947: E5678_06035
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Entry
E5678_06035 CDS
T05960
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03030
DNA replication
hyc03410
Base excision repair
hyc03420
Nucleotide excision repair
hyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5678_06035 (ligA)
03410 Base excision repair
E5678_06035 (ligA)
03420 Nucleotide excision repair
E5678_06035 (ligA)
03430 Mismatch repair
E5678_06035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyc03032
]
E5678_06035 (ligA)
03400 DNA repair and recombination proteins [BR:
hyc03400
]
E5678_06035 (ligA)
Enzymes [BR:
hyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E5678_06035 (ligA)
DNA replication proteins [BR:
hyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E5678_06035 (ligA)
DNA repair and recombination proteins [BR:
hyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E5678_06035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E5678_06035 (ligA)
MMR (mismatch excision repair)
DNA ligase
E5678_06035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E5678_06035 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Zn_Ribbon_TF
5_3_exonuc
DUF7340
DUF4796_N
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QCB45619
LinkDB
All DBs
Position
complement(1349060..1351150)
Genome browser
AA seq
696 aa
AA seq
DB search
MSTSDLFSEQPSPADRAVELRAQLHHHAHRYYTLDDPEIPDAEYDKLFRELQALEADHPE
LRSSDSPTQRVGGRVLEGFTPVRHVVPMLSINTETDTEPSGAVNFDNRIRRALERVDGDA
SVEYVAELKFDGLAMSLRYEAGVLVQAATRGDGETGEDVTANIRTVGQIPLRLPVGTPPV
LEVRGEVYMRRDEFEGLNEKQRAKIAAGAKGEKTFVNPRNAAAGAVRQLDSGIAAQRPLS
FFAYGLGDITPVDQGGPAFATHMEMLAQLKAWGFPVAEQTRVVSGADELVAFHQQIGNTR
DQLPYDIDGVVYKVNSLALQRQLGFVSREPRWAVAHKYPAQEQLTRVLAIDIQVGRTGKL
TPVAKLAPVFVGNVTVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVSVLLDKRVG
EPAQFTMPHVCPVCGSAAVREEDEADYRCTGGLFCGAQRKQAILHFAQRRAVEVEGLGDK
LVEQMVDAGVVKTLPDLYKLGFTALASLERMAEKSAQNIVNALEKSKQTTLPRFLFGLGI
RHVGEATAKELARHFGQLDRIMDASEEQLVEVNDVGPIVAQSLRTFFDQPHNREVVEQLR
ACGVHWEELEPAAQGPKPLSGKTFVLTGSFPKLSRDQAKELLEAAGAKVAGSVSKKTDYV
VAGTDAGSKLTKAQDLGVTVLDEAAMLALLEAPGPT
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctctgaccttttttctgagcagccatcgccggccgatcgcgcggttgagctg
cgtgcgcaattgcaccaccacgcccaccgttactacacgctggacgatcccgagattccg
gatgcggaatacgacaagctgttccgtgagttgcaggcgctggaggccgatcatcctgaa
ttgcgctcgtctgactcgcccacgcagcgcgtgggaggccgggtgctggagggcttcacg
ccggtgcgccatgtcgtgcccatgctgtcgatcaacacggagaccgataccgagcccagc
ggcgcggtgaatttcgacaaccgcattcgtcgcgcgctggaacgggtagacggcgacgcg
tcggtggagtatgtggccgaactcaagtttgacggactggcgatgagcctgcgctacgaa
gcaggcgtgctcgtgcaggccgccacgcgcggcgacggcgagaccggggaggatgtgacc
gccaatattcgcaccgtgggccagatcccgttgcgcctgccggtagggactccgcctgtg
ctggaggtgcgcggcgaggtttatatgcggcgtgacgaatttgagggactgaacgaaaaa
cagcgcgccaagatcgcggctggcgccaaaggggaaaagacttttgtgaacccgcgcaat
gcggcggcgggggcggtgcggcaactcgattccggcattgcagcccagcgccccctgagc
tttttcgcctatgggctgggcgacatcacacctgtcgaccaaggtggcccagcctttgcg
acccacatggagatgctcgcgcaactcaaagcctggggctttcccgtggcggagcagacc
cgtgtggtcagcggggcggatgagctggtggcttttcaccagcagattggcaatacccgc
gatcagctgccctacgacatcgacggcgtggtctacaaagtcaattcgctggctttgcaa
cgacagttgggctttgtttcccgggagccgcgctgggccgtggcgcacaaatacccggcg
caagaacagctcactagggttttggcgattgatattcaggtgggtcgcactggcaagctc
actcccgtggcgaagctcgcacctgtgttcgtcggcaacgtgaccgtcaccaacgccacg
ctgcacaacgaagacgaggcgcgtcgaaaagacgtgcgcgtgggcgacacggtgatcgtg
cggcgggcgggcgatgtgattcccgaagtggtgtcggtcttgctggacaagcgggtgggt
gaacctgcacagttcaccatgccacatgtgtgcccggtgtgtggaagcgccgccgtgcgc
gaagaggatgaagccgattaccgttgcaccggtggtttgttttgtggtgcgcagcgcaag
caggccattcttcatttcgcccagcgccgcgccgtggaggtcgaagggctgggcgacaag
ctggttgagcaaatggttgacgccggtgtggtcaaaacgctgccagacctctacaaactg
ggcttcaccgccttggcgagtctggagcggatggccgaaaaatcggcgcagaacatcgtc
aatgcgctggaaaagtccaagcaaaccaccctgcctcgtttcctttttggtctgggtatc
cgccatgtcggggaagccaccgccaaagagctcgcacgccatttcggccagcttgaccgc
atcatggacgcgagcgaagagcagttggtggaagtcaacgatgtgggccctatcgtggcg
caaagcctgcgcaccttctttgatcaaccccacaaccgcgaagtggtcgaacagttgcgc
gcttgcggcgtgcactgggaagagcttgagcccgccgcgcaggggcctaaacccctgtca
ggcaagaccttcgtgctgacgggctcgtttcccaaattgagccgtgatcaggccaaagaa
ctgctcgaagccgcgggtgccaaggtggccggctcggtgagcaaaaaaacagactatgtg
gtggcgggcaccgacgctggcagcaagctcaccaaggcgcaggatctgggtgtgacggtg
ctcgacgaagcagcgatgttggccttgctggaagcgccaggacctacttga
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