Hymenobacter sp. DG25B: PK28_09550 Help Entry PK28_09550        CDS       T03500                                  Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism hyd  Hymenobacter sp. DG25B Pathway hyd03030   DNA replication hyd03410   Base excision repair hyd03420   Nucleotide excision repair hyd03430   Mismatch repair Brite KEGG Orthology (KO) [BR:hyd00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     PK28_09550    03410 Base excision repair     PK28_09550    03420 Nucleotide excision repair     PK28_09550    03430 Mismatch repair     PK28_09550  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:hyd03032]     PK28_09550    03400 DNA repair and recombination proteins [BR:hyd03400]     PK28_09550 Enzymes [BR:hyd01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      PK28_09550 DNA replication proteins [BR:hyd03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      PK28_09550 DNA repair and recombination proteins [BR:hyd03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      PK28_09550    NER (nucleotide excision repair)     GGR (global genome repair) factors      PK28_09550    MMR (mismatch excision repair)     DNA ligase      PK28_09550   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       PK28_09550 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH Auto_anti-p27 zf-ribbon_3 Motif Other DBs NCBI-ProteinID:  AIZ63868 UniProt:  A0A0A7LN60 LinkDB All DBs Position complement(2255584..2257722) Genome browser AA seq 712 aa AA seqDB search MSDFSAIQLQIQTLTERLHHLNYQYYQRDISEIPDQEFDHMLAELQQLEKQYPELALPNS PTQRVGGTITKQFPTAVHKYPMLSLGNTYSEADLRDFDERVRRGLEGADVTYVCELKFDG IAMSLSYTDGQLSQGVTRGDGTRGDVVTSNVRTIKNLPLHLQPAPNQPKEFEVRGEIFMP LPVFEELNAEREANGEALLANPRNAASGALKLQNSALVAARRLRFFAYNYLSSHRDFPTH SAALEAMQSWGLPVSDTWRRCSSIEEVLAFIHQWEKQRFSLPVATDGIVIKVDDLRQQEM LGFTAKSPRWAIAYKYPAEAARTRLNHIQYQIGRTGAVTPVALLNPVPLAGTVVKRASVH NANQIAALDLRLGDMVFVEKGGEIIPKITGVDLSARPADSVPIVYPTECPACGTPLIRPE GEAHFRCPNERGCPPQRKAKLEHYVSRKALNIDGLGAETVGRLFDLGLVTDAASLYDLPL HATELAQLERMGEKSVQRLLTGLEQSKAVPFERVLFGLGIRYVGETVAEKLAAHYRSIDA IAAASVLELAAVPEVGGVIAESVAAWFQEPDNRHLIERLRAAGVQLALTGEAPQAKSNRL EGLTFVLSGVFERYSRDELQQLIQQHGGKLTGSISKKLSYLVAGDKMGPAKREKATELKV PIIGENDLLAMLPEEDPESSAENVSSPTTAAAPAMPASSSAGKAAGTQGSLF NT seq 2139 nt NT seq  +upstreamnt  +downstreamnt atgtccgatttcagcgctattcagcttcagatacagacccttaccgaacgcctgcatcat cttaactaccaatattaccagcgggatatttcggaaataccggatcaggagttcgaccat atgctggccgagctgcagcagctggaaaagcaataccccgagctggccctgcccaactcc cctactcagcgcgtaggcggcaccattaccaagcagtttcctacggcggtgcacaagtac cccatgctgtcgttgggcaacacctattccgaggccgacctgcgggattttgatgagcgg gtgcgccggggcctggaaggcgcggacgtgacgtatgtctgcgagctgaagtttgatggc atagccatgagcctgagctacaccgacggccagctcagccagggcgtcacccggggcgac ggcacccgcggcgacgtagtcaccagcaacgtgcgcaccatcaaaaacctgccactacac ctgcagccggccccaaatcagcccaaggaatttgaggtacggggcgagatatttatgccg ctgccggtatttgaggagctgaacgccgagcgggaagccaacggcgaagctttgctggcc aacccccgcaatgccgccagcggcgcgcttaagctgcaaaactctgctttggtggctgcc cggcgcctgcgcttttttgcttataactacctcagcagccaccgggattttcccacgcac agcgcggcgctggaagctatgcaaagctggggtctgcccgtatcggacacctggcggcgg tgctcatctatagaggaagtgctggcgtttattcatcagtgggaaaagcagcgtttttcg ctgccggtggctaccgatggcatcgttataaaagtagacgacctgcggcagcaggaaatg ctgggcttcacggccaaaagcccccgctgggctattgcttataaataccccgccgaggcc gcccgcacccgcctcaaccatattcagtaccagataggccgcacgggcgccgttacgccg gttgcgctgctgaacccggtcccgctggccggcaccgtggtaaaacgggcctccgtgcac aacgccaaccagatagcggccctggacctacgcctgggcgacatggtatttgtggagaaa ggcggcgaaatcattcccaaaatcacgggcgtagacctctctgcccgccccgccgacagc gtcccaattgtgtatcccacggaatgccccgcctgcggtactccgcttatccggcccgaa ggcgaagcgcatttccgctgccccaatgagcgcggctgcccgccccagcgcaaagccaag ctggagcactacgtatcgcgcaaggccctgaatattgatggcttgggcgcggaaaccgtg ggccgcctgtttgacctgggcctggtgacggatgccgccagcctttatgatctgcccctg catgccacggagctggcgcagctggagcgcatgggcgagaaatcggtgcagcgcctgctg acgggcctggagcaaagtaaagcggtgccgtttgagcgggtgctttttggattaggtatt cgttacgtgggcgaaaccgtggccgaaaagctggcggctcattaccgctctattgatgcc attgcagccgcttccgtgctggagctggcggccgtgccggaagtgggcggcgttattgcg gagtcggtggcagcgtggtttcaggaaccggataaccgccacctgatagagcgcctgcgc gcggccggcgtgcagctggccctcaccggcgaagcaccccaggctaaaagcaaccggctg gaaggcctcacctttgtattatccggcgtgtttgagcgctacagccgcgacgagctgcag cagcttattcagcagcacggcggcaagctgacgggctccatctccaaaaaactgagctac ctggtagccggcgacaagatgggccccgccaagcgcgagaaggccacggagctgaaagtg cccatcattggcgaaaacgacctactggctatgctacctgaggaagacccggaatcttca gcagaaaatgtctcctcgcctaccaccgccgcggctcctgctatgccagcttcttcttcc gcgggcaaggcagccggcacccaaggcagtttgttttaa

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