Ephemeroptericola cinctiostellae: DTO96_102317
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Entry
DTO96_102317 CDS
T05560
Symbol
ligA_3
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyf
Ephemeroptericola cinctiostellae
Pathway
hyf03030
DNA replication
hyf03410
Base excision repair
hyf03420
Nucleotide excision repair
hyf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DTO96_102317 (ligA_3)
03410 Base excision repair
DTO96_102317 (ligA_3)
03420 Nucleotide excision repair
DTO96_102317 (ligA_3)
03430 Mismatch repair
DTO96_102317 (ligA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyf03032
]
DTO96_102317 (ligA_3)
03400 DNA repair and recombination proteins [BR:
hyf03400
]
DTO96_102317 (ligA_3)
Enzymes [BR:
hyf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DTO96_102317 (ligA_3)
DNA replication proteins [BR:
hyf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DTO96_102317 (ligA_3)
DNA repair and recombination proteins [BR:
hyf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DTO96_102317 (ligA_3)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DTO96_102317 (ligA_3)
MMR (mismatch excision repair)
DNA ligase
DTO96_102317 (ligA_3)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DTO96_102317 (ligA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Fur_reg_FbpA
zf-HYPF
Motif
Other DBs
NCBI-ProteinID:
AXF86562
UniProt:
A0A345DDX4
LinkDB
All DBs
Position
complement(2523768..2525864)
Genome browser
AA seq
698 aa
AA seq
DB search
MQTTFDLFSEPEHSPSEVDRARMLALSESLTRHNQAYYVHDAPVISDAQYDALFNELLAL
EQQYPQWRTVDSPTQRVGAAPLDAFKKVQHVVPMLSLANAFSSEDIDAFDVRMRDELCAT
GLLTSDALVEYAVEVKFDGLAINLRYEHGVLVQAATRGDGQTGEEVTENVRTIRSIPLRL
HTDAPPAVLEVRGEVLMQRKDFENLNASQLEKGEKLFANPRNAAAGGLRQLDSSITAQRK
LSFFAYGVGLVDDQNTQPFPQDSFQRVVMQLADFGLPVYTKDNVVQGAAGLLNFYTSLQS
RRDGLPFDIDGVVYKVNNTLQQEALGFVSRSPRWAIAHKFPAQEMTTTVLDIDVQVGRTG
AITPVARLAPVEVGGVVVSNATLHNIDELMRKDVRIGDTVVVRRAGDVIPEVVMCIIEQR
PADARMFIMPTACPECGSPIVREEGEAISRCTGGLICPAQVKQSLMHFAQRRAVNVDGLG
DKLIEQLVDVGLVKTPDDLYQLSVAQLAGLERMAQKSAQNVHDALQVSKNTTLARFIYAL
GIRHVGEATAKSLAQHFGSLPSVQHASFEALCEVADVGPVVAQAIVAFFADARHQAVIEA
LIECGMHWDDVLPKADASSAAGMFFGKTVVLTGTLPTLGRDEAKALLEAAGAKVSGSVSS
KTHFVVAGAEAGSKLEKAQALGVTVLDESEMLAHLNGG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactacttttgatttattttccgaacctgagcactcaccgagtgaggttgaccgt
gcacgcatgcttgctttgagcgagtcgctgacccgtcacaatcaggcgtattatgtccac
gatgcgcctgtcatcagtgatgcccaatacgatgcgttgttcaatgagctgttggcttta
gagcagcagtacccacagtggcgcacggttgattcgccgacacagcgcgtgggtgcggca
ccgttggatgcttttaaaaaagtgcagcatgtggtgccgatgttgtcgttggcgaatgcg
ttttcgagtgaagacattgatgcttttgatgtgcgcatgcgtgatgagttgtgcgctacg
ggcttgttgacaagcgatgcgctggttgagtatgcggttgaggttaaatttgatggtttg
gcgattaatttgcgttatgagcatggggttttggtgcaggctgcgacccgtggcgatggg
caaacgggtgaggaggtgactgaaaatgtgcgcaccatccgttcgattcctttgcgtttg
cacaccgatgcgccgcctgctgtgcttgaggtgcgtggtgaggtgttgatgcagcgcaaa
gattttgaaaacctcaatgcgtcgcaacttgaaaaaggtgaaaagttgtttgcgaatcca
cgcaatgcggcggcaggcggtttgcgtcagcttgattcatccatcaccgcacaacgcaaa
ttgtcattttttgcatacggcgttggtttggtggacgatcaaaatacacagccgtttcca
caggacagttttcagcgtgtggtgatgcaacttgctgattttggtttgcctgtttacacc
aaagacaatgtggttcaaggcgcggcaggtttgctgaatttttatacaagcctgcagagc
cgccgtgacggtttgccttttgacatcgatggtgtggtgtataaagtcaacaataccctt
cagcaagaagctttggggtttgtgtcacgttcgccgcgctgggcgattgcccataagttc
cccgctcaagaaatgaccacgacggtgctcgacatcgatgtgcaagtggggcgcacgggg
gcgatcacgcctgtggcgcggcttgcgcctgttgaggtcggtggcgtggtggtcagcaat
gcgacgttgcacaacatcgatgagctcatgcgcaaagatgtgcgcattggcgacacggtg
gtggtgcgtcgtgcgggtgatgtgattccagaggtggtcatgtgcatcattgaacaacgt
cctgcggatgcacgcatgttcatcatgccgacggcttgccctgaatgcggttcgccgatt
gtgcgtgaagagggggaggcgatttcgcgttgtacaggtggattgatttgtcccgctcaa
gtgaagcaaagtttgatgcattttgcccaacgtcgtgcggtcaatgtcgatggtttggga
gataaactcattgagcaattggtcgatgtgggtttggtgaaaacccccgatgatctgtat
caactttcggtggcgcagttggcgggtttggagcgcatggcgcaaaaatctgcgcagaat
gttcatgatgcgttgcaggtgtcaaaaaacaccacgttggcgcgttttatttacgcattg
ggcattcgccatgtgggcgaagccactgcaaaatccttggcacagcattttggcagcttg
cccagcgtacagcacgcgagttttgaagcgttgtgcgaagtggccgatgtggggcctgtg
gttgcgcaggccatcgtcgccttttttgccgatgcccgtcatcaagctgtcattgaggca
ctgatagaatgcggtatgcactgggatgatgtgctgccaaaagcagatgcaagcagtgct
gcgggcatgttttttggtaaaactgtggtgctcacggggacattgccgactttagggcga
gatgaggcgaaagccttgcttgaggctgcgggcgcaaaagtgtcgggcagtgtgtccagc
aaaacacattttgtggtcgcgggtgcagaagcaggttcaaagctggagaaagcgcaggca
ttgggtgtgacggtcttggatgaaagcgagatgctggctcatttgaatgggggttag
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