Hymenobacter oligotrophus: D3Y59_05050
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Entry
D3Y59_05050 CDS
T05656
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03030
DNA replication
hyh03410
Base excision repair
hyh03420
Nucleotide excision repair
hyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D3Y59_05050 (ligA)
03410 Base excision repair
D3Y59_05050 (ligA)
03420 Nucleotide excision repair
D3Y59_05050 (ligA)
03430 Mismatch repair
D3Y59_05050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyh03032
]
D3Y59_05050 (ligA)
03400 DNA repair and recombination proteins [BR:
hyh03400
]
D3Y59_05050 (ligA)
Enzymes [BR:
hyh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D3Y59_05050 (ligA)
DNA replication proteins [BR:
hyh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D3Y59_05050 (ligA)
DNA repair and recombination proteins [BR:
hyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D3Y59_05050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D3Y59_05050 (ligA)
MMR (mismatch excision repair)
DNA ligase
D3Y59_05050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D3Y59_05050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
Motif
Other DBs
NCBI-ProteinID:
AYA36477
UniProt:
A0A3B7RQM3
LinkDB
All DBs
Position
1201496..1203529
Genome browser
AA seq
677 aa
AA seq
DB search
MTDLFAVQDKIRALTERLHYLNHQYYQNDVSEVPDQEFDRMLHELQDLEKQYPEYAQPNS
PTQRVGGTITKQFPTQEHRYPMLSLANTYSEADLREFDERVQRGLEGAEYQYVCELKFDG
VAMSLTYENGQLTRGVTRGDGTRGDVVTNNVRTIKTLPLHLRPASDQPADFEVRGEVFMP
LSVFNDLNAEREQNGEPLLANPRNAASGTLKLQDSALVAARRLRFYAYSFLSSRRDFPTH
SAALEALKRWGLPVSDTWRLCGSIEQVLEFIHHWDKRRFELPVATDGIVIKVDDLRQQEL
LGFTAKSPRWAIAYKYPAEAGRTRLLRIEYNVGRTGAVTPVAHLEPVPLAGTVVKRASVH
NANQIAALDLRLGDMVFVEKGGEIIPKITGVDLLARPADAQPIAYPTTCPACATPLVRPE
GEAHYRCPNERGCAPQLKSKLEHYVSRKALNIDGLGAETVGRFFDLGLVRTAADLYDLPQ
RRDELVNLDRLGEKSVQRMFAGLETSKEVPFDRVLFGLGIRYVGETVAEKLAAHYRTIDA
ILGASAAELAAVPEVGGVIADSVALWAQDPANRELVARLQAAGVQMQLTGEAPQPLSDRL
NSLTFVLSGVFEQHSREELEQIIERNGGKLSSSISKKLSYLVAGDKMGPAKREKATALKV
PIIGETDLLAMVSDGGL
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctgttcgccgttcaggacaaaattcgcgcccttaccgagcgcctccactac
ctcaaccaccagtactaccagaacgacgtgtcggaggtgcccgaccaggagttcgaccgc
atgctgcacgagctgcaggatctggaaaaacaataccccgagtacgcccagcccaactcg
cctacccagcgcgtgggcggtaccatcaccaagcagttccccacgcaggagcaccgttac
cccatgctctcgttggccaacacctactcggaggccgatttgcgcgagttcgacgagcgc
gtgcagcgcggcctggagggtgccgagtaccagtatgtgtgcgagctgaagttcgacggc
gtggccatgagcctgacctacgaaaacggccagctaacgcgcggcgtaacccgcggcgac
ggcacccgcggggacgtggttaccaacaacgtgcgcaccattaaaacgctgccgcttcac
ctgcgccctgcatcagaccagcccgccgactttgaagtgcgtggcgaggtattcatgccc
ctatcggtgtttaacgacctgaatgccgaacgcgagcaaaacggcgaaccgctactggcc
aacccgcgcaacgcggcctcgggcacactcaagctgcaggactcggccctggtggcggcg
cggcgcctgcggttctacgcctactcctttctgagttcgcgccgcgattttccgacccac
agcgcggccctggaggccctcaagcgctggggtttgcccgtgtcggatacgtggcggctg
tgcggcagcatcgagcaggtgctggagttcattcatcactgggacaagcgccgcttcgaa
ctgcccgtagccaccgatggcatcgtaattaaggttgatgacctgcgccagcaggagctg
ctgggcttcacggccaaaagccctaggtgggccattgcctacaagtacccggcagaggct
ggccgcacccggctgctgcgcatcgagtacaacgtgggccgcaccggggccgttacgccc
gtggcacacctcgagccggtgcccctggccggtaccgtggtaaagcgcgcttcggtgcac
aacgccaaccaaattgcggccctcgatttgcgcctgggcgacatggtatttgtggagaag
ggcggcgagattatccccaagattaccggtgtcgatttgctggcccgccccgccgatgcc
cagcctatagcctaccccaccacgtgcccggcctgcgccacgccgctggtgcggcccgaa
ggcgaagcccactaccgctgccccaacgagcggggctgcgccccccagctcaagagcaag
ctcgagcattacgtatcgcgcaaggccctgaacatcgacgggctaggtgccgaaaccgtg
ggccgctttttcgacctagggttggtgcgcactgccgccgacttgtacgacctgccccag
cgccgcgacgagttggtaaacctcgaccgcctaggcgagaaatcggtgcagcgcatgttt
gccggcctcgaaaccagcaaggaagtccccttcgatcgggtgttattcgggctgggcatc
cggtacgtgggcgaaaccgtggccgaaaagctggccgcgcattaccgtaccatcgacgcc
atcctaggtgcctcggccgcggagttggccgcggtgcccgaggtgggcggcgtaattgcc
gacagcgtggccttgtgggcccaagaccccgccaaccgcgagctagtagcccgcctgcag
gccgccggcgtgcaaatgcagcttaccggcgaggccccgcagcccctcagcgaccggctc
aacagcctcacgtttgtgctttcgggtgtgtttgagcagcattcgcgcgaggagctggag
caaatcatcgagcgcaacggcggcaagctcagctcctccatcagcaagaagctcagctac
ctggtagccggcgacaaaatgggcccggccaagcgcgaaaaagccacggcgttaaaagtg
cccatcatcggggagacggacctgctggccatggtgtcggacggcgggctttaa
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integrated database retrieval system
