Hymenobacter jejuensis: FHG12_19350
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Entry
FHG12_19350 CDS
T06049
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyj
Hymenobacter jejuensis
Pathway
hyj03030
DNA replication
hyj03410
Base excision repair
hyj03420
Nucleotide excision repair
hyj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FHG12_19350 (ligA)
03410 Base excision repair
FHG12_19350 (ligA)
03420 Nucleotide excision repair
FHG12_19350 (ligA)
03430 Mismatch repair
FHG12_19350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyj03032
]
FHG12_19350 (ligA)
03400 DNA repair and recombination proteins [BR:
hyj03400
]
FHG12_19350 (ligA)
Enzymes [BR:
hyj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FHG12_19350 (ligA)
DNA replication proteins [BR:
hyj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FHG12_19350 (ligA)
DNA repair and recombination proteins [BR:
hyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FHG12_19350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FHG12_19350 (ligA)
MMR (mismatch excision repair)
DNA ligase
FHG12_19350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FHG12_19350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
zf-NADH-PPase
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QDA62123
UniProt:
A0A5B8A5Z2
LinkDB
All DBs
Position
4693560..4695701
Genome browser
AA seq
713 aa
AA seq
DB search
MSDPTSPQERIKTLTQRLHHLNYQYYQNDVSEVPDQEFDHMLAELQALEKEFPEFVLPNS
PTQRVGGTVTKQFPTALHRYPMLSLGNTYSEADLRDFDERVSRGLEGAEYTYVCEMKFDG
VAMSLTYENGELTQGVTRGDGTRGDVVTNNVRTIKNLPLHLRPAPNQPTEFEVRGEIFMP
ITVFDELNAEREQNGEALLANPRNAASGTLKLQDSAMVAARRLRFFAYSFLSSGRTFPTH
SASLEALKAWGLPVSDTWRLCHSINEVLDFVHHWEKKRFELPVATDGIVIKVDDLRQQEV
LGFTSKSPRWAIAYKYPAEKARTRLNSIQYQVGRTGAVTPVAMLTPVPLAGTVVKRASVH
NANQIAALDLRIGDMVFVEKGGEIIPKITGVDLTARPADSEPIKYPTECPACGTPLIRPE
GEAHFRCPNDEGCPPQLKAKLEHYVSRKALNIDGLGTETVGRFFDLGLVRTPADIYDLTA
ATLTGLERLGEKSINNLLKGVEASKQVPFDRVLFGLGIRYVGETVAEKLAAHYRTIDAMA
AASAGELAATPEVGGVIAESLAEWFSDANNRELIERLRAAGVQLALTGEPPRAQSDRLAG
LTFVLSGVFEQHSREELQHLIQQHGGKITGSISKKLSYLVAGDKMGPAKREKATELKVPI
ISETDLLAMIPSDLEAEDDVAGADADTLSLTGDPTLTAPADSAAEPGKQGSLF
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatccaacttccccgcaggaaagaataaagaccctcacccagcgtctgcatcac
cttaattatcaatactatcagaacgacgtgtcggaagttccggatcaggagttcgaccac
atgctagcagagcttcaggccttggaaaaagaattcccggagtttgtgctgcccaattcg
cccacccagcgcgttgggggcaccgtcaccaagcagtttccgacggccttgcaccgctac
cccatgctgtcgctgggcaacacctactcggaggccgatctgcgcgacttcgacgagcgg
gtgagccgcggcctcgaaggagccgagtacacgtacgtgtgcgaaatgaagttcgacggc
gtggccatgagcctaacttacgaaaacggcgaactcacccagggcgtcacgcgcggcgac
ggtacccgtggcgacgtggttaccaataacgtacgcacaatcaagaacttacccctccat
ctgcgcccggccccaaaccaaccgaccgagtttgaggtgcgcggcgagatctttatgccc
attaccgttttcgacgaactgaacgcggagcgcgagcaaaacggcgaggctttgctggcc
aacccccgcaatgctgctagtggcaccctcaagcttcaagattcggcgatggtggccgca
cgacggctgcgattttttgcgtacagctttctgagcagcggccgcaccttccccacgcac
agcgcgtcgctggaagccctgaaagcctgggggttgccggtgtcggatacgtggcgcctg
tgccattccatcaacgaggtgctggactttgtgcatcactgggaaaagaagcgcttcgag
ctgcccgtggccaccgacggcatcgtgatcaaggtcgatgacctgcgtcagcaggaagtt
ctgggcttcacctcgaagagtccgcggtgggccattgcttataaatacccggccgaaaaa
gcccgtacgcgcctcaattccattcaataccaagtggggcgtaccggcgccgtgacgcca
gtagccatgcttacgcccgtgccgctggccggaacggtggtaaaacgggcttccgtacac
aacgccaaccagatagctgccctcgacttgcgcatcggcgacatggtgtttgtggagaag
ggcggcgaaatcattcctaaaatcacgggggttgacctcaccgctcgcccggccgacagc
gaaccgatcaagtaccccaccgagtgcccggcttgcggcacgccgctcatacgccccgaa
ggcgaagcgcacttccgctgccccaacgacgaaggatgcccgccgcaattgaaagcaaag
ctcgaacactacgtttcccgtaaagccttgaatatcgatggattgggaaccgaaacggtg
ggtcgcttcttcgacttggggttggtccggacgccggccgacatttatgacctcaccgcc
gctacgctgacgggcctagagcggctgggcgaaaaatccatcaacaacctgctcaaaggc
gtcgaggccagcaagcaagttccgtttgatcgggtgctgtttgggttgggcattcgctat
gtgggcgaaacggtggccgaaaagttggctgcgcattaccgcaccatcgatgccatggca
gccgcctcagccggcgagctcgccgctacgcccgaagtgggcggcgtaattgccgaatcg
ctggccgaatggttttccgacgccaacaaccgcgagctaattgagcggctgcgcgcggcg
ggcgtgcagcttgccctgaccggcgagccgccccgtgcccaaagcgaccggttggccggc
ctcacctttgtgttgtcaggtgtatttgagcagcacagccgcgaagagctgcaacacctg
attcagcagcacggcggcaagataacgggctctatcagcaagaagctcagttacttagta
gccggcgacaaaatgggccctgccaaacgcgagaaagctaccgaactgaaagtgcccatc
atcagcgaaaccgatttgctggccatgattccttctgacctcgaagccgaagacgatgtt
gccggcgctgatgccgataccctttccctgactggcgacccaacactaactgcacctgcc
gattctgccgccgaaccgggcaagcagggttcgttattctag
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