Hymenobacter yonginensis: O9Z63_06475
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Entry
O9Z63_06475 CDS
T08743
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyk
Hymenobacter yonginensis
Pathway
hyk03030
DNA replication
hyk03410
Base excision repair
hyk03420
Nucleotide excision repair
hyk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O9Z63_06475 (ligA)
03410 Base excision repair
O9Z63_06475 (ligA)
03420 Nucleotide excision repair
O9Z63_06475 (ligA)
03430 Mismatch repair
O9Z63_06475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyk03032
]
O9Z63_06475 (ligA)
03400 DNA repair and recombination proteins [BR:
hyk03400
]
O9Z63_06475 (ligA)
Enzymes [BR:
hyk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O9Z63_06475 (ligA)
DNA replication proteins [BR:
hyk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O9Z63_06475 (ligA)
DNA repair and recombination proteins [BR:
hyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O9Z63_06475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O9Z63_06475 (ligA)
MMR (mismatch excision repair)
DNA ligase
O9Z63_06475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O9Z63_06475 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
ABC_tran_CTD
Motif
Other DBs
NCBI-ProteinID:
WBO85890
UniProt:
A0ABY7PSK3
LinkDB
All DBs
Position
complement(1498761..1500899)
Genome browser
AA seq
712 aa
AA seq
DB search
MSTTDLQARITALTERLHHLNYQYYQRDISEIPDQEFDQLLAELAALEKQHPELAHPNSP
TQRVGGTITKQFPTAVHRYPMLSLGNTYSEADLREFDERVQKGLEGAEYAYVCELKFDGV
AMSLTYENGQLTQGVTRGDGTRGDVVTSNVRTIKNLPLHLRTAGPTQPPEFEVRGEIFMP
QPVFAELNAEREENGEALLANPRNAASGALKLQDSALVAARRLRFYAYSFLMPGRSSFPT
HSASLEALSAWGLPVSDTWRRCNSLAEVLDFVHEWDKKRFTLPVATDGIVIKIDDFRQQE
LLGYTAKSPRWAIAYKYPAEAGRTRLRDVQYQVGRTGAVTPVALLDPVPLAGTVVKRASM
HNANQIAALDIRLNDMVFVEKGGEIIPKITGVDLTARPADSQPIVYPTTCPACNTPLIRP
EGEAHFRCPNDRGCPPQRKAKLEHYVSRKALNIDGLGAETVGRFFDLGLVTDAASLYDLP
AKAAELAQLDRMGEKSVQRLLAGLEQSKLVPFDQVLFGLGIRYVGETVAEKLANHYRTME
ALMAATATELAAVPEVGGVIAESAAAWFQEPQNQELVARLRAAGVQLELTGEAPQAMSNR
LEGLTFVLSGVFELHSRDELQALIEAHGGKITGSISKKLSYLVAGDKMGPAKREKATGFK
VPIISEAELLAMLPAGLEATSNPAETAATEDSAPSASNPAPTQGTGTQTSLF
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaccgacctccaggcccgcatcacggccctcaccgagcgcctgcaccacctc
aactaccagtactaccagcgcgacatcagcgagattcccgaccaggagttcgaccagctg
ctggcagagctggccgccctggaaaaacagcaccccgaactggcccaccccaactcgccc
acccagcgcgtgggcggcaccatcaccaagcagttcccgacggccgtgcaccgctacccc
atgctcagcctcggcaacacctactccgaagccgacctgcgcgagttcgacgagcgggtg
caaaagggtttggaaggtgcggaatacgcctacgtctgcgagctgaagttcgacggcgtg
gccatgagcctcacttacgaaaacggccagctcacgcagggcgtcacgcgcggcgacggc
acccgcggcgacgtggtgaccagcaacgtgcgtaccatcaagaacctgccgctgcacctg
cgcaccgccggcccaactcagccgccggagtttgaggtacgcggcgaaatcttcatgccc
cagccggttttcgcggagctgaacgctgagcgcgaggaaaacggcgaggccctgctggcc
aacccgcgcaacgccgccagcggcgccctcaagctccaggattcggcgctggtggccgcc
cggcggctgcgcttctacgcctactccttcctgatgccgggccgcagcagcttccccacg
cacagcgcctcgctggaggcgctgagtgcctggggcttgcccgtatcggacacttggcgg
cggtgcaactccctggccgaggtactggattttgtgcacgagtgggacaaaaagcgcttc
acgctgcccgtcgccaccgacggcatcgttatcaagattgacgatttccggcagcaggag
ctgctgggctacacggccaaaagcccccgctgggccattgcctacaagtatccggcggaa
gccggccgcacccgcctgcgcgacgtgcagtaccaggtgggccgcaccggcgccgtcacg
cccgtggccctgctcgaccccgtgccgctggccggcaccgtggtgaagcgcgcctccatg
cacaacgccaaccagattgccgcccttgatatccgcctcaacgacatggtgtttgtggag
aaaggcggcgaaatcatccccaaaatcaccggcgtggacctcaccgcccgccccgccgac
agccagcccatcgtgtaccccacgacgtgcccagcctgcaacacgcccctgatccggccc
gagggcgaggcccacttccgctgccccaacgaccggggctgcccgccccagcgcaaggcc
aagctggagcattacgtatcgcgcaaggccctgaacatcgacgggctgggcgcagaaact
gtgggccgcttcttcgatttgggccttgtgacggacgcggccagcctctacgacctgccc
gccaaagccgcagagctggcccagctcgaccggatgggcgagaagtcggtgcagcggctg
ctggcaggcctggagcaaagcaagctggtgccgtttgatcaggtgctgttcgggctgggc
atccggtacgtgggcgaaaccgtggccgagaagctagccaaccactaccgcaccatggag
gccctgatggccgcaacggccaccgagctggccgccgtgccggaagtgggcggcgtcatt
gccgagtcggcggcggcgtggtttcaggagccgcagaaccaagagctggtggcgcggctg
cgggcggcaggcgtgcagctggagctaaccggcgaagcaccgcaagccatgagcaaccgc
ctcgaaggcctcacctttgtgctatcgggcgtgtttgagctgcattcacgcgacgagctg
caggccctgattgaggcacacggcggcaaaatcacgggcagcatcagcaagaagctcagc
tacctggtggccggcgacaagatgggcccggccaagcgcgaaaaagccaccggcttcaaa
gtgcccatcatcagcgaagccgaactgctggccatgctgcccgccggcctggaagccact
tcaaatcccgcggaaacagccgctacagaagattctgctccgtcagcgtcaaacccagcg
ccgacccagggcactggaacccagacttcgctgttctag
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integrated database retrieval system
