Hymenobacter sp. APR13: N008_02135
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Entry
N008_02135 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
hym
Hymenobacter sp. APR13
Pathway
hym00300
Lysine biosynthesis
hym00550
Peptidoglycan biosynthesis
hym01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
N008_02135
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
N008_02135
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hym01011
]
N008_02135
Enzymes [BR:
hym01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
N008_02135
Peptidoglycan biosynthesis and degradation proteins [BR:
hym01011
]
Precursor biosynthesis
Amino acid ligase
N008_02135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
CbiA
Motif
Other DBs
NCBI-ProteinID:
AII50782
LinkDB
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Position
complement(504535..505965)
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AA seq
476 aa
AA seq
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MTAQQGPTDVPVQQLTLDSRQAAPGAVFFALRGAATDGHQFIEKAVAQGVAAVVCEVLPA
ELNPATAYVQVPDSAEAMAHMAAAFYGHPSRSLTLVGVTGTNGKTTCATLLHKLLRELGY
HTGLLSTVQNQIDEQVIPATHTTPDAIRLNELLARMVAAGCTHACMEVSSHAVVQHRTTA
LRFAGGIFTNLTHDHLDYHGTFDNYLKAKKGFFDSLPKTAFALTNADDKRGMVMLQNTAA
RRETYSLRSAATFRAKLIENAVHGLHLEIDGHDAQFRLIGVFNAYNLLAVYGAAVLLGEE
PLEVLTVLSGLLSAPGRFEPVVSGKTRVTGIVDYAHTPDALENVLQTIADIRQPTQQVIT
VVGCGGNRDGAKRPIMAHLACQGSDRVVLTSDNPRFEDPNDILAQMQAGVKVQDQAKVLT
IPDRREAIKTAVTLAGPNDIVLVAGKGHETYQEVKGVKADFDDKKVLQEMFELLGK
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacggcgcagcaaggccccaccgacgtgcccgtgcagcagctcacgctggactcgcgg
caggcggcgcccggcgccgtgtttttcgcgctgcgtggcgctgccaccgatgggcatcag
tttattgagaaggccgtggcgcagggcgtggccgcggtggtgtgcgaagtgctgcccgcc
gaactgaacccggccaccgcctacgtgcaggtgcccgactcagccgaggccatggcccac
atggcggctgccttctacggccacccgtcgcgcagcctcacgctggttggcgtgaccggc
accaacggcaaaaccacctgcgctacgctgctgcacaagctgctgcgtgagctgggctac
cacaccgggctgctcagcaccgtgcagaaccagattgacgagcaggtgattccggccacc
cacaccacgcccgacgccatccgcctcaacgagctgctggcccgcatggtggcagccggc
tgtacccacgcctgcatggaagtgagcagccacgccgtagtgcagcaccgcaccacggcg
ctgcgcttcgccgggggcatcttcaccaacctcacccacgaccacctcgactaccacggc
acgttcgataactacctgaaagccaagaagggctttttcgatagtctgcccaaaacggcc
ttcgccctcaccaacgccgacgacaagcgcggcatggtgatgctgcagaacaccgccgcc
cgccgcgaaacctactcgctgcgcagcgccgccacgttcagggccaagctgattgaaaac
gccgtgcatggcctgcacctcgaaattgacgggcacgacgcgcagttccggctgattggg
gtgttcaacgcctacaacctgctggccgtgtatggcgcggccgtgctgctgggcgaggag
ccgctggaagtgctgaccgtgctgtcgggtctgctgtcggcgccgggccgcttcgagccg
gtggtatcgggcaaaacccgcgtgacgggcatcgtggactacgcccacacacccgacgcg
ctggaaaacgtgctccagaccattgccgacatccgccagccgacccagcaggtaattacg
gtggtgggctgcggcggcaaccgcgacggcgccaagcgccccatcatggcgcacctggcc
tgccagggctccgatagggtggtgctgacctccgacaacccgcgcttcgaagaccccaac
gatattctggcccagatgcaggccggcgtgaaggtgcaggaccaggccaaagtcctcacc
atccccgaccggcgcgaggccatcaaaaccgccgtcacgctggccgggcccaacgatatt
gtgctggtagccggcaaaggccacgaaacctaccaggaagtgaaaggcgtgaaagccgat
ttcgacgataaaaaggtattgcaggagatgtttgagctgctggggaagtaa
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